Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00713 ATGGTCAGGCCACACGATCTCTTCATCACTGTTCCCACTCACTTCCGTTGCCCAATTTCTCTCGACCTCATGCAATCTCCCGTCAGTTTGACCACCGGCGTCACCTACGACCGCTCCAACATCCAGCGCTGGCTTGACTCCGGCCATAATACTTGCCCCGCCACCATGCAGATCCTCCACAACTACGACTTCGTTCCCAATTCTAATCTCAAGCGACTCATTCAGATTTGGTCCGATTCCCTCCAATTCCCCCTCTCTACACTCGCCCAATCGGATCATATTCTTACCGCCGTCGACGATTTGCGCACAAATGGAAATGGCTCTGTTTCTGCTTCTCTGTCGAAGCTGCTCTGTTTCGGTGCACGATTGGAGCAGAACGTTAAGTTTCTCGGGAGGATTCATGGCTTCGTGCCGGTGCTTCTTGATGTTCTTCGTTGTAGAGATGTTGATTGTTCGGAACTGGTGGTTAGAGTTTTGGATTTGGTGAGATGCGAAATTGAGGATCGGGAGGAGTTTATGAACATGATGTTGAAAAGCGATCGCGATTGTTTGAGATCTCTGGTTCTCGTTCTACAGCGAGGAAGTTCGGAATCGCGAATTGGAACAGCGAGGCTTCTCGAGTGCGTCGCCATTAACGCCGTATCAAAGAACCTAATCGCCGAAAACGAAGGGATTCTTCACGAATTGATTGGAGTAATTGGAATAGACGAAGATCCAAAACTAATCGAATCAGTACTCTCGTGCTTGATCGCAATATCAATGCCGAAACGAGTGAAAATCAAACTGGTTCGATTAGGGGTAATAAAAGCCCTAACCAGACTGCTGAAGCACCGGAACGCCAGCGTAGGAGTAACGGAGAAGGTTCTGAGACTGTTGGCGGCGGCGGCGGCGGTGGAGGAAGGGCGGTCGGAGATGTTGGAGAACGGAGGAGAATGCGTCGGGGGGATGGTGAGGAAAGTGATGAAGGTGTCGAGCGCGGCGACAGAGCAGGCGGTGACGGCGCTGTGGTGCATATGCTATTTGTTCCGGGAAGAGAGGGCGGCGGAGGCGGTGGCGGAGGCGAAAGGGGTTGAGAAGATATTGATGCTGATGCAGAGCCACTGCCCGGCGTCGGTCAGGCAGATGGCCAAAGATCTTCTAAAGATTTTGAAGGTTAATTCCATGTCCTCTTGCTTATCAATTTATGATACTAACAATTCTTACATTATGCCCTTTTGA 1218 50.57 MVRPHDLFITVPTHFRCPISLDLMQSPVSLTTGVTYDRSNIQRWLDSGHNTCPATMQILHNYDFVPNSNLKRLIQIWSDSLQFPLSTLAQSDHILTAVDDLRTNGNGSVSASLSKLLCFGARLEQNVKFLGRIHGFVPVLLDVLRCRDVDCSELVVRVLDLVRCEIEDREEFMNMMLKSDRDCLRSLVLVLQRGSSESRIGTARLLECVAINAVSKNLIAENEGILHELIGVIGIDEDPKLIESVLSCLIAISMPKRVKIKLVRLGVIKALTRLLKHRNASVGVTEKVLRLLAAAAAVEEGRSEMLENGGECVGGMVRKVMKVSSAATEQAVTALWCICYLFREERAAEAVAEAKGVEKILMLMQSHCPASVRQMAKDLLKILKVNSMSSCLSIYDTNNSYIMPF 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9983755 9984972 - Lsi10G007130.1 Lsi10g00713 672270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00713 405 PANTHER WDSAM1 PROTEIN 5 405 IPR045185 GO:0061630
Lsi10g00713 405 CDD RING-Ubox_PUB 15 57 IPR045210 -
Lsi10g00713 405 Pfam U-box domain 11 78 IPR003613 GO:0004842|GO:0016567
Lsi10g00713 405 Gene3D - 84 393 IPR011989 -
Lsi10g00713 405 ProSiteProfiles U-box domain profile. 10 84 IPR003613 GO:0004842|GO:0016567
Lsi10g00713 405 SMART Ubox_2 14 77 IPR003613 GO:0004842|GO:0016567
Lsi10g00713 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 83 IPR013083 -
Lsi10g00713 405 SUPERFAMILY RING/U-box 6 79 - -
Lsi10g00713 405 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 266 310 IPR000225 GO:0005515
Lsi10g00713 405 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 5 405 - -
Lsi10g00713 405 SUPERFAMILY ARM repeat 106 396 IPR016024 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g01136 Lsi10g00713 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00713 Lsi-Chr10:9983755 Lsi10g01136 Lsi-Chr10:15647612 8.07E-35 dispersed
Lsi01g01136 Lsi-Chr1:9537778 Lsi10g00713 Lsi-Chr10:9983755 2.76E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00713 - - csv:101221867 633.639