Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00828 ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA 516 48.84 MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPDAGRGTVEDYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11636937 11637452 + Lsi10G008280.1 Lsi10g00828 672385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00828 171 MobiDBLite consensus disorder prediction 1 24 - -
Lsi10g00828 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Lsi10g00828 171 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 117 - -
Lsi10g00828 171 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 133 170 - -
Lsi10g00828 171 MobiDBLite consensus disorder prediction 32 49 - -
Lsi10g00828 171 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Lsi10g00828 171 SUPERFAMILY beta-beta-alpha zinc fingers 55 79 IPR036236 -
Lsi10g00828 171 MobiDBLite consensus disorder prediction 1 49 - -
Lsi10g00828 171 Pfam C2H2-type zinc finger 56 78 - -
Lsi10g00828 171 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 117 - -
Lsi10g00828 171 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 133 170 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g00828 Lsi11g01280 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01048 Lsi-Chr7:15867619 Lsi10g00828 Lsi-Chr10:11636937 3.96E-11 dispersed
Lsi10g00828 Lsi-Chr10:11636937 Lsi11g01280 Lsi-Chr11:21415643 3.28E-28 dispersed
Lsi10g00828 Lsi-Chr10:11636937 Lsi06g01429 Lsi-Chr6:24837405 1.78E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26049 PF13912 zf-C2H2_6 3.70E-07 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00828 - - bhj:120072235 215.698