Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi11g01184 ATGCCGGCAATGGTTTCTCCATGGGGAAAACCAGGCGCTTGGGCCCTCGATTCCGAGGAACACGAAGCTCAACTCCTTAAGGAAGAGGAACTGCAGAAACGAGCGGAACGCAGCCTGGATTTTCCTTCCCTCAACGATGCCTTGGCCACCAAGCCGAAGAAGAAAGGGCAAACTCTCTCATTGGCTGAGTTCAACGCCTTTGGAAGTACCGGGTCGAGATCTTCTTCGCAAGGCCTCAAGCATGAGGATTTGATTGTACTGCCCACTGGCCCTCGCCAACGGACGGCGGAGGAGCTCGACCGGAACAGGCTCGGTGGTGGATTCAGGAATTATGGTTCGAATGGTTCGTATGAGAGGAATAATAGGTATTCTAATGGGGATGATTCGTCTAATTCGAAGTGGGGTTCGTCTAGGGTTTCTGATGAGAATCGGAGGAATAGTAATGGGTCTAATAGAGTGGATTCGAGTAAGGAATTTACATCTTCTAGGGCTGACGAGGTTGATAATTGGGCTTTAACTAAGAAACCTATGGCTGCAAATGGATTTGAGAGGAGGGAGAGAGGAGTAGGGTTTTCGGATTCGCAATCTTCAAAAGCCGACGAATCAGAGAGTTGGGTTTCTAATAAGAGCAATATTCCGTCGGATGGGAGGAGATTTGACAGAGAGCGACGAGGAGGGTTCACGGCGAGCGGCGGCGGGGCAGATTCAGACAATTGGGGGAGGAAGAAAGAGGAAGGTAATACTGGTGGCATCATTGGTGGTCGGCCAAAGCTTAATCTGCAGCCACGGACGCTGCCGGTTAGCGACGGGAAATCGTCGGAGATATCAGGGACGGCGGCGAGGTCCAAGAGTTCGAACCCATTTGGAGCGGCGAGGCCGAGGGAAGAGGTTCTAGCTGAGAAGGGACATGACTGGAAAAAGCTTGACGAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCAGTGGAGGAGAAGACAGAAAAATCCAACGTCATTTCCTTTGGAAAAAAGAGCTTTAACAATGGAAATAGGCGGGTTACTGAGGATAGAACAGAGAGGAGCTGGAGGAAGCCGGAGACACCGCCGCAGGAGTCACCGGAATCTCTTCCCGACAGTGGGGAGGAAAATGAAAATGGAGACTGCGAAGGCGAACTCAAAGAGGACGAAAATGGAGCTTGA 1176 51.19 MPAMVSPWGKPGAWALDSEEHEAQLLKEEELQKRAERSLDFPSLNDALATKPKKKGQTLSLAEFNAFGSTGSRSSSQGLKHEDLIVLPTGPRQRTAEELDRNRLGGGFRNYGSNGSYERNNRYSNGDDSSNSKWGSSRVSDENRRNSNGSNRVDSSKEFTSSRADEVDNWALTKKPMAANGFERRERGVGFSDSQSSKADESESWVSNKSNIPSDGRRFDRERRGGFTASGGGADSDNWGRKKEEGNTGGIIGGRPKLNLQPRTLPVSDGKSSEISGTAARSKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSVEEKTEKSNVISFGKKSFNNGNRRVTEDRTERSWRKPETPPQESPESLPDSGEENENGDCEGELKEDENGA 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20325688 20327252 + Lsi11G011840.1 Lsi11g01184 674351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi11g01184 391 Coils Coil 16 38 - -
Lsi11g01184 391 Pfam Plant specific eukaryotic initiation factor 4B 4 316 IPR010433 GO:0003743
Lsi11g01184 391 MobiDBLite consensus disorder prediction 294 330 - -
Lsi11g01184 391 MobiDBLite consensus disorder prediction 67 391 - -
Lsi11g01184 391 MobiDBLite consensus disorder prediction 369 383 - -
Lsi11g01184 391 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 362 IPR010433 GO:0003743
Lsi11g01184 391 MobiDBLite consensus disorder prediction 192 213 - -
Lsi11g01184 391 MobiDBLite consensus disorder prediction 113 157 - -
Lsi11g01184 391 MobiDBLite consensus disorder prediction 265 285 - -
Lsi11g01184 391 MobiDBLite consensus disorder prediction 341 359 - -
Lsi11g01184 391 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 1 362 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g00469 Lsi11g01184 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01639 Lsi-Chr8:24272409 Lsi11g01184 Lsi-Chr11:20325688 4.31E-48 transposed
Lsi11g00933 Lsi-Chr11:13387510 Lsi11g01184 Lsi-Chr11:20325688 6.99E-86 transposed
Lsi10g00469 Lsi-Chr10:6804811 Lsi11g01184 Lsi-Chr11:20325688 2.10E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi11g01184 - - bhj:120077882 674.085