Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1424 ATGCTCCAACAGCGTCTGTATGCGTATTTTAGTGTCGTTGTCTATTCGACAATCCTGACTTCGCTGGCTCGGGCGTTCACTAACCCGCCGGATGTGACAGCACTTCAGGATTTTTACAGTGCTTTGAATTATCCACCAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGAGGAATCATGGGCTGGAGTTTCTTGCTCTGGGTCATCTGTAATATACCTTAAACTTCATGGACTGAACCTCACTGGGAATCTTGGAGGGCAGCTCAATAGTCTTAATACTTTGAAGCAACTGGATGTTAGTTCCAATAGACTTACGGGTGGAATTCCTCGCAACTTGCCCCCTAATGCCACTCATATAAATATGGCATTCAACAATTTGAGCGAAAATATTCCACATACTTTATCTAACTTGGGAAGTCTCCGACATCTGAATCTGAGCCATAATACTCTATCTGGTGTGATTGGAAATGTGTTCACTGGTTTACAGAATTTGAGGGAGATGGACTTGTCATATAATGGATTCACTGGTGATTTGCCAAGTTCATTCGGTTCCCTGACAAACATCACCAGGCTGTTCTTGCAGGACAACAAATTCACTGGATCGGTTGCCTACTTGTCTCACCTTCCATTAATTGACTTGATTGGGGGAAATAGGTTCCGTCAAGAAGTCAATTCTCCACCCTGGGATTTCCCCCTGGAAAAAGCACCAGTGGTGAAAAACATCAGTGGTCCTCCAACAACCAAGTCAAATGCCATCCAGAATTATCCCTCTCGTGGTAGTATAGTCAGGCATGAGAAGAAAAGGCTCGGTCCTGGTGGAATAGTTCTCCTGGTTGGGGGGATAACACTAGTAGTAACCTTTACGGCTCTCTTTGTTGTTTTCACCATGAAGAAAGTACATGAAAAGAAAATAAATTTGAAGATTAGCAATATTTTACCCCGTTCTCTCCCTCTTGACAAATCTGAAGATGTTACACTTCTATTTTCTCTGATAGATGGTTCGTCTACTGCACCAGAAGAAAGTTCACGAAGTTTGTCCCTTAGTTCTCTACTTATGGGTGGTCCAAGGCCTATACCTCTATTAAATCACACAAGAACCGAGAAATTTTCTGGAAGAAAAGGTTTCTCAAAGAGATGCAGGCTCCCGGTGAGAACAAAAGTTTACACTCTAGCAGAGCTTCAATCTGCAACAAACAACTTTAGCGATGCGAATCTTCTTGGAGAGGGATCTCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCTGTGAAAAACATCAACATGGAAGAACTCTCTTTTACAGAAGAAGAGCAGTTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCGAACATTGTTACACTGTTTGGATATTGTGTAGAGCATGGACAACATTTACTCGGATATGAATATGTTCGAAATTTGTCTCTTGGTGACGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTTTCCAGATTGCTCTTGGAGTTGCTAGGGCCTTAGATTATTTGCATACAAGCTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTTCCAACATCTTACTTGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGTTGTCTGTTTTGAGGCCACTTGTGATCAATAGAGTTAAAACAAAGGCTTCTGAGATTGTCAGTGGTGACAGAGGCTACCTTGCACCTGAACACGGCCAGCCAGGATTTGATAATACCAGAAGTGATGTGTATTCTTTCGGAGTGTTGCTTTTGGAGCTTGTCACAGGAAGAAAACCATTTGACAATTCGAAACCCAGGAAAGAGCAGTCGCTGGTGAAATGGGCTTCATCTCGGCTTCATGACAATGAGAGTTTGGAACAGATGGTTGATCCAGGCATTAAAGGAACATTTTCCTCTAAGACCCTCTCTCGCTTTGTCGACATTATCTCCCTTTGTATACAGCCTGTGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACACCTGACAAAGCTTCAGAAAAAGATGGAAATGGAGAAACGAGGTGCAGCAGAATTAGGAAGTGTTACTGAAGTGGATCCTTTTGAGAAATCTTTTCGTTCAACCAACACTGGCTTCGTAAGTTCACCAGCATACAGCTATTGTTCCACCTCGTTT 2187 43.07 MLQQRLYAYFSVVVYSTILTSLARAFTNPPDVTALQDFYSALNYPPELKGWRKEGGDPCEESWAGVSCSGSSVIYLKLHGLNLTGNLGGQLNSLNTLKQLDVSSNRLTGGIPRNLPPNATHINMAFNNLSENIPHTLSNLGSLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNGFTGDLPSSFGSLTNITRLFLQDNKFTGSVAYLSHLPLIDLIGGNRFRQEVNSPPWDFPLEKAPVVKNISGPPTTKSNAIQNYPSRGSIVRHEKKRLGPGGIVLLVGGITLVVTFTALFVVFTMKKVHEKKINLKISNILPRSLPLDKSEDVTLLFSLIDGSSTAPEESSRSLSLSSLLMGGPRPIPLLNHTRTEKFSGRKGFSKRCRLPVRTKVYTLAELQSATNNFSDANLLGEGSLGAVYRAEFPDGQVLAVKNINMEELSFTEEEQFLDVVWTASRLRHPNIVTLFGYCVEHGQHLLGYEYVRNLSLGDALHCEAYMPLSWTVRFQIALGVARALDYLHTSFFPPFAHCNLKASNILLDEELMPRICDCGLSVLRPLVINRVKTKASEIVSGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQSLVKWASSRLHDNESLEQMVDPGIKGTFSSKTLSRFVDIISLCIQPVKEFRPPMSEIVEHLTKLQKKMEMEKRGAAELGSVTEVDPFEKSFRSTNTGFVSSPAYSYCSTSF 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15328696 15334135 - MC05g1120 Mch5g1424 688843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1424 729 Pfam Leucine Rich Repeat 97 115 IPR001611 GO:0005515(InterPro)
Mch5g1424 729 Pfam Protein kinase domain 406 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1424 729 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 368 480 - -
Mch5g1424 729 Gene3D Phosphorylase Kinase; domain 1 367 480 - -
Mch5g1424 729 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Mch5g1424 729 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 27 683 IPR046959 -
Mch5g1424 729 Gene3D Transferase(Phosphotransferase) domain 1 482 702 - -
Mch5g1424 729 Pfam Leucine rich repeat 150 201 IPR001611 GO:0005515(InterPro)
Mch5g1424 729 ProSiteProfiles Protein kinase domain profile. 403 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1424 729 SUPERFAMILY Protein kinase-like (PK-like) 380 680 IPR011009 -
Mch5g1424 729 SUPERFAMILY L domain-like 26 212 - -
Mch5g1424 729 Gene3D Ribonuclease Inhibitor 28 243 IPR032675 -
Mch5g1424 729 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 229 - -
Mch5g1424 729 FunFam Leucine-rich repeat receptor-like protein kinase 481 690 - -
Mch5g1424 729 SMART LRR_typ_2 188 211 IPR003591 -
Mch5g1424 729 SMART LRR_typ_2 164 187 IPR003591 -
Mch5g1424 729 SMART LRR_typ_2 140 163 IPR003591 -
Mch5g1424 729 SMART LRR_typ_2 94 121 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1424 Mch-Chr5:15328696 Mch8g1013 Mch-Chr8:7183135 3.25E-117 dispersed
Mch5g1422 Mch-Chr5:15321490 Mch5g1424 Mch-Chr5:15328696 2.75E-229 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77418 PF00069 Pkinase 2.70E-35 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1424 - - - 0.0