Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g0732 ATGGAATTGAAGGACATCATTCCGCCGGCACCGCCGCTGTTACTGCCGGACCTCTCGTTGCAGATTAGTCCGCCGTCGGATTCCGGCAGCGATCTGAGCCATGAGAATGCTGCTGCACGGCTTTTTACCAAAACCCATCTGGATTTAGGGCCCAATAGTGGCGCCGGCCGCCGTGATCTCCACCGTCAAAATCAAATCTTTGGGCGTGCCACCTTCAAGAGAGCTCCCAAAATGGCGTTTGGGGTTAGGAGAAATATTAGAGCTCCGAGAATGAGATGGACCACTACTCTCCATGCCCATTTCGTCCACGCCGTTCAGCTCCTCGGCGGCCATGAAAGGGCAACGCCAAAATCTGTGTTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAAAGCCATTTGCAGATGTATAGAACGGTGAAAAGCACTGACAAATCTACTGACTTTGCCTTGAAGAAGCAGAGGCAAGATCAGGTTGATGCTGTTGGTGTTTCAGATTGTGAGATTTCTAACCCAACTCTTACAATGTGGAAAAGCCCTGATCAAATGGACATGTTCTCTTCATCAATGGAGACAAATCATGAGATGACGACCAGAAGGAGTCAACATTACAACAATGGTAGCACTGGAAACAACAACCAGGAGCAGGAGGAGGACCGACACAAGGCAAGCATCAAAATCTCGAGTGGCGTGAAGAAGCAGAAATTGGAGGGTAGCTGCTTGTCGTTGAGTGACCATGGCCATGTGTATACTCATAATAATAATACTCTTAACTTAGAATTCACTCTCGGATATGCCCAAATTCTCTAA 819 47.86 MELKDIIPPAPPLLLPDLSLQISPPSDSGSDLSHENAAARLFTKTHLDLGPNSGAGRRDLHRQNQIFGRATFKRAPKMAFGVRRNIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTDFALKKQRQDQVDAVGVSDCEISNPTLTMWKSPDQMDMFSSSMETNHEMTTRRSQHYNNGSTGNNNQEQEEDRHKASIKISSGVKKQKLEGSCLSLSDHGHVYTHNNNTLNLEFTLGYAQIL 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5187994 5190833 + MC08g0639 Mch8g0732 694353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g0732 272 Pfam Myb-like DNA-binding domain 90 141 IPR001005 -
Mch8g0732 272 SUPERFAMILY Homeodomain-like 86 143 IPR009057 -
Mch8g0732 272 Gene3D - 88 145 - -
Mch8g0732 272 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 142 IPR006447 GO:0003677(InterPro)
Mch8g0732 272 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 15 269 IPR044847 GO:0000976(InterPro)|GO:0006355(InterPro)|GO:0010158(InterPro)
Mch8g0732 272 MobiDBLite consensus disorder prediction 194 232 - -
Mch8g0732 272 MobiDBLite consensus disorder prediction 194 216 - -
Mch8g0732 272 FunFam Myb family transcription factor 87 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1933 Mch-Chr1:19178333 Mch8g0732 Mch-Chr8:5187994 4.44E-20 dispersed
Mch6g2207 Mch-Chr6:24348847 Mch8g0732 Mch-Chr8:5187994 1.03E-32 dispersed
Mch8g0732 Mch-Chr8:5187994 Mch8g2224 Mch-Chr8:25341436 1.80E-30 dispersed
Mch11g0241 Mch-Chr11:1520458 Mch8g0732 Mch-Chr8:5187994 4.51E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43817 PF00249 Myb_DNA-binding 1.10E-05 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g0732 - - - 0.0