Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch9g2062 | ATGAGCTCCGAAGACTCCAAAACTTCCATGGATTTGGTTCAGCCCTCTGAGCACCTCTGTTATGTGAGATGCAACTTCTGCAACACTGTTCTTGCGGTTGGGATTCCATGCAGACGTTTGCTGGATACAGTGACAGTGAAATGTGGTCATTGTAGTAACCTTTCATTTTTGAGCACGAGGCCGCCATTGCAAGGCCAATGCATTGATCATCCTCTGGGTTTTCAGACGCAGGTGGGATTCTCCAATGATATTCGAAAGGGTGCATCGACATCGTCCACATCGACATCGTCTTCAATGGCGAATGAGTCTCCCTCTCCAAGTTTTGTTGTGAAACCCCCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCACATCGAGAAGCATTCAGTGCAGCAGCAAAGAACTGGGCAAGGTACATTCCGAATTCAGCTGCGGGGTCGGTTTCGGGTACTCACAACAATGAATGA | 522 | 47.32 | MSSEDSKTSMDLVQPSEHLCYVRCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLGFQTQVGFSNDIRKGASTSSTSTSSSMANESPSPSFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNNE | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 21735622 | 21737738 | - | MC09g1607 | Mch9g2062 | 698944 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch9g2062 | 173 | Pfam | YABBY protein | 15 | 157 | IPR006780 | GO:0007275(InterPro) | |
Mch9g2062 | 173 | CDD | HMG-box_SF | 118 | 154 | - | - | |
Mch9g2062 | 173 | PANTHER | PROTEIN YABBY 6-RELATED | 15 | 170 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER) | |
Mch9g2062 | 173 | MobiDBLite | consensus disorder prediction | 85 | 116 | - | - | |
Mch9g2062 | 173 | MobiDBLite | consensus disorder prediction | 85 | 105 | - | - | |
Mch9g2062 | 173 | SUPERFAMILY | HMG-box | 104 | 155 | IPR036910 | - | |
Mch9g2062 | 173 | Gene3D | High mobility group box domain | 105 | 159 | IPR036910 | - | |
Mch9g2062 | 173 | FunFam | protein CRABS CLAW isoform X3 | 109 | 168 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch8g3074 | Mch-Chr8:33217996 | Mch9g2062 | Mch-Chr9:21735622 | 5.82E-37 | dispersed | |
Mch9g2062 | Mch-Chr9:21735622 | Mch9g2254 | Mch-Chr9:22896056 | 3.12E-28 | dispersed | |
Mch9g2062 | Mch-Chr9:21735622 | Mch6g1777 | Mch-Chr6:20335000 | 3.30E-38 | transposed | |
Mch9g2062 | Mch-Chr9:21735622 | Mch6g0711 | Mch-Chr6:4887665 | 9.75E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44111 | PF04690 | YABBY | 3.40E-54 | CL0114 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch9g2062 | K25796 | - | csv:101219863 | 295.049 |