Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch9g2062 ATGAGCTCCGAAGACTCCAAAACTTCCATGGATTTGGTTCAGCCCTCTGAGCACCTCTGTTATGTGAGATGCAACTTCTGCAACACTGTTCTTGCGGTTGGGATTCCATGCAGACGTTTGCTGGATACAGTGACAGTGAAATGTGGTCATTGTAGTAACCTTTCATTTTTGAGCACGAGGCCGCCATTGCAAGGCCAATGCATTGATCATCCTCTGGGTTTTCAGACGCAGGTGGGATTCTCCAATGATATTCGAAAGGGTGCATCGACATCGTCCACATCGACATCGTCTTCAATGGCGAATGAGTCTCCCTCTCCAAGTTTTGTTGTGAAACCCCCTGAGAAGAAACACAGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCACATCGAGAAGCATTCAGTGCAGCAGCAAAGAACTGGGCAAGGTACATTCCGAATTCAGCTGCGGGGTCGGTTTCGGGTACTCACAACAATGAATGA 522 47.32 MSSEDSKTSMDLVQPSEHLCYVRCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLGFQTQVGFSNDIRKGASTSSTSTSSSMANESPSPSFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNNE 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21735622 21737738 - MC09g1607 Mch9g2062 698944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch9g2062 173 Pfam YABBY protein 15 157 IPR006780 GO:0007275(InterPro)
Mch9g2062 173 CDD HMG-box_SF 118 154 - -
Mch9g2062 173 PANTHER PROTEIN YABBY 6-RELATED 15 170 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Mch9g2062 173 MobiDBLite consensus disorder prediction 85 116 - -
Mch9g2062 173 MobiDBLite consensus disorder prediction 85 105 - -
Mch9g2062 173 SUPERFAMILY HMG-box 104 155 IPR036910 -
Mch9g2062 173 Gene3D High mobility group box domain 105 159 IPR036910 -
Mch9g2062 173 FunFam protein CRABS CLAW isoform X3 109 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g3074 Mch-Chr8:33217996 Mch9g2062 Mch-Chr9:21735622 5.82E-37 dispersed
Mch9g2062 Mch-Chr9:21735622 Mch9g2254 Mch-Chr9:22896056 3.12E-28 dispersed
Mch9g2062 Mch-Chr9:21735622 Mch6g1777 Mch-Chr6:20335000 3.30E-38 transposed
Mch9g2062 Mch-Chr9:21735622 Mch6g0711 Mch-Chr6:4887665 9.75E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44111 PF04690 YABBY 3.40E-54 CL0114 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch9g2062 K25796 - csv:101219863 295.049