Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g1471 ATGGAAGCTCCTCAAGTTTTCCACAAGAAACAATCCAATGCCTACTCTACTTCCCCCTTCGCCTCCGACGACCCCCCTGCTGGAGACCATTTCAGTGTCGAGGAGCTTTTCGACTTCTCCAACGACGACGACGACGACGACGACGACGCTGGAGTTGGTTTCTTCCATTCCGCCGACTCCTCCGCCGTCACCGCCGTCGAGAGTTGTAATTCTTCGTCGTTTTCGGGTTGCGAACCCGTTTCGTTCTTGGAGGATTCTGATTTACCCGACGCCCAATTCTCCGACCAACTCTGCATTCCGGAAGACGATTTAGCTGAGCTGGAATGGCTTTCAAATTTGGTGGAGGAACCATTTTCCAGCGAAGATATACAAAAATTAGAACTCATCACCGGAGTCAAAGTCAAACCCGACGAGCCCTCACAAATCCGGCAACCCGCCACCACCCACGCCGCCGCAATTTTCAAACCGGAGATCGTTTCGGTTCCTGCGAAGGCGCGTAGCAAACGCTCACGCGCCGCCCCATCCAATTGGAACAACTCCCTCCTCCTCTCCCCCTCTCCGGCCACCTCCTCGTCGGAACCCGAAATCCCCGCCGGACCGCCGCCGCCGCCGCTAAAAATCAGAGCAACCCCGAAAGTGGCGGCGGCGAAAAAGAGAGACTCGTCGGAGGCGGGATTGTCCGCCGCCGTGGAGGGGCGGCGGTGCATGCACTGCTCCACCGACAAGACGCCGCAGTGGCGGACAGGCCCAATGGGCCCAAAGACGCTGTGTAACGCTTGTGGGGTCCGGTACAAGTCGGGTCGGTTGGTACCCGAGTACCGACCCGCCGCCAGCCCCACCTTCGTCCTGACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGACAGAAGGAGATGGTCAGATCTCAACAGCCGCCACACCAGCCGTTGATTTTGGATCATCATCATCATCATCAGGATATGATCTTTGATTCATCCAACGGTGACGATTATCTCATCCAGCAAAGCATGGCCCACGATTACCGGCAGCTTTTATGA 1047 56.64 MEAPQVFHKKQSNAYSTSPFASDDPPAGDHFSVEELFDFSNDDDDDDDDAGVGFFHSADSSAVTAVESCNSSSFSGCEPVSFLEDSDLPDAQFSDQLCIPEDDLAELEWLSNLVEEPFSSEDIQKLELITGVKVKPDEPSQIRQPATTHAAAIFKPEIVSVPAKARSKRSRAAPSNWNNSLLLSPSPATSSSEPEIPAGPPPPPLKIRATPKVAAAKKRDSSEAGLSAAVEGRRCMHCSTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRSQQPPHQPLILDHHHHHQDMIFDSSNGDDYLIQQSMAHDYRQLL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9361522 9363681 - Sed0007929.1 Sed03g1471 706958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g1471 348 SMART GATA_3 229 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1471 348 MobiDBLite consensus disorder prediction 1 31 - -
Sed03g1471 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 293 - -
Sed03g1471 348 PANTHER GATA TRANSCRIPTION FACTOR 30 301 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Sed03g1471 348 FunFam GATA transcription factor 227 311 - -
Sed03g1471 348 Pfam GATA zinc finger 235 269 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1471 348 MobiDBLite consensus disorder prediction 165 211 - -
Sed03g1471 348 CDD ZnF_GATA 234 281 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1471 348 Gene3D - 229 279 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed03g1471 348 MobiDBLite consensus disorder prediction 171 193 - -
Sed03g1471 348 MobiDBLite consensus disorder prediction 194 208 - -
Sed03g1471 348 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1471 348 ProSiteProfiles GATA-type zinc finger domain profile. 229 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g1471 348 PIRSF Txn_fac_GATA_plant 16 325 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0905 Sed-Chr2:46512908 Sed03g1471 Sed-Chr3:9361522 4.70E-28 dispersed
Sed03g1471 Sed-Chr3:9361522 Sed09g1604 Sed-Chr9:39528717 1.20E-60 dispersed
Sed03g1471 Sed-Chr3:9361522 Sed05g1505 Sed-Chr5:28732694 3.60E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37863 PF00320 GATA 1.80E-15 CL0167 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g1471 - - - 0.0