Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g1471 | ATGGAAGCTCCTCAAGTTTTCCACAAGAAACAATCCAATGCCTACTCTACTTCCCCCTTCGCCTCCGACGACCCCCCTGCTGGAGACCATTTCAGTGTCGAGGAGCTTTTCGACTTCTCCAACGACGACGACGACGACGACGACGACGCTGGAGTTGGTTTCTTCCATTCCGCCGACTCCTCCGCCGTCACCGCCGTCGAGAGTTGTAATTCTTCGTCGTTTTCGGGTTGCGAACCCGTTTCGTTCTTGGAGGATTCTGATTTACCCGACGCCCAATTCTCCGACCAACTCTGCATTCCGGAAGACGATTTAGCTGAGCTGGAATGGCTTTCAAATTTGGTGGAGGAACCATTTTCCAGCGAAGATATACAAAAATTAGAACTCATCACCGGAGTCAAAGTCAAACCCGACGAGCCCTCACAAATCCGGCAACCCGCCACCACCCACGCCGCCGCAATTTTCAAACCGGAGATCGTTTCGGTTCCTGCGAAGGCGCGTAGCAAACGCTCACGCGCCGCCCCATCCAATTGGAACAACTCCCTCCTCCTCTCCCCCTCTCCGGCCACCTCCTCGTCGGAACCCGAAATCCCCGCCGGACCGCCGCCGCCGCCGCTAAAAATCAGAGCAACCCCGAAAGTGGCGGCGGCGAAAAAGAGAGACTCGTCGGAGGCGGGATTGTCCGCCGCCGTGGAGGGGCGGCGGTGCATGCACTGCTCCACCGACAAGACGCCGCAGTGGCGGACAGGCCCAATGGGCCCAAAGACGCTGTGTAACGCTTGTGGGGTCCGGTACAAGTCGGGTCGGTTGGTACCCGAGTACCGACCCGCCGCCAGCCCCACCTTCGTCCTGACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGACAGAAGGAGATGGTCAGATCTCAACAGCCGCCACACCAGCCGTTGATTTTGGATCATCATCATCATCATCAGGATATGATCTTTGATTCATCCAACGGTGACGATTATCTCATCCAGCAAAGCATGGCCCACGATTACCGGCAGCTTTTATGA | 1047 | 56.64 | MEAPQVFHKKQSNAYSTSPFASDDPPAGDHFSVEELFDFSNDDDDDDDDAGVGFFHSADSSAVTAVESCNSSSFSGCEPVSFLEDSDLPDAQFSDQLCIPEDDLAELEWLSNLVEEPFSSEDIQKLELITGVKVKPDEPSQIRQPATTHAAAIFKPEIVSVPAKARSKRSRAAPSNWNNSLLLSPSPATSSSEPEIPAGPPPPPLKIRATPKVAAAKKRDSSEAGLSAAVEGRRCMHCSTDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRSQQPPHQPLILDHHHHHQDMIFDSSNGDDYLIQQSMAHDYRQLL | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9361522 | 9363681 | - | Sed0007929.1 | Sed03g1471 | 706958 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g1471 | 348 | SMART | GATA_3 | 229 | 279 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1471 | 348 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Sed03g1471 | 348 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 232 | 293 | - | - | |
Sed03g1471 | 348 | PANTHER | GATA TRANSCRIPTION FACTOR | 30 | 301 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Sed03g1471 | 348 | FunFam | GATA transcription factor | 227 | 311 | - | - | |
Sed03g1471 | 348 | Pfam | GATA zinc finger | 235 | 269 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1471 | 348 | MobiDBLite | consensus disorder prediction | 165 | 211 | - | - | |
Sed03g1471 | 348 | CDD | ZnF_GATA | 234 | 281 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1471 | 348 | Gene3D | - | 229 | 279 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Sed03g1471 | 348 | MobiDBLite | consensus disorder prediction | 171 | 193 | - | - | |
Sed03g1471 | 348 | MobiDBLite | consensus disorder prediction | 194 | 208 | - | - | |
Sed03g1471 | 348 | ProSitePatterns | GATA-type zinc finger domain. | 235 | 260 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1471 | 348 | ProSiteProfiles | GATA-type zinc finger domain profile. | 229 | 265 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g1471 | 348 | PIRSF | Txn_fac_GATA_plant | 16 | 325 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0905 | Sed-Chr2:46512908 | Sed03g1471 | Sed-Chr3:9361522 | 4.70E-28 | dispersed | |
Sed03g1471 | Sed-Chr3:9361522 | Sed09g1604 | Sed-Chr9:39528717 | 1.20E-60 | dispersed | |
Sed03g1471 | Sed-Chr3:9361522 | Sed05g1505 | Sed-Chr5:28732694 | 3.60E-65 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37863 | PF00320 | GATA | 1.80E-15 | CL0167 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g1471 | - | - | - | 0.0 |