Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0622 ATGAACCATCTCTTTGAACTGCCTGAACAGATTTGCTATGTGCAATGTGGAGTTTGCACCACTATTTTGTTGGTCAGTGTGCCGTTCAGCAGCTTGTCGATGGCGGTGATGGTGACGTGCGGACACTGCTCGAGCCTCCTTTCTGTCAACATGATGAAAGCCACTCTGGTTCCTCTCCATTTTCTGTCTTCTCTTTATCACAATGTGCCCAAAGAAGATTGTGGAGATATGAATTCAGGGAATTTCTTTGAGAGTGTCAAGAGATCATCAAACTTGAAGTTTTCTGAGTATGAGATTGAAGAAGGATTGATTCCTGTGACACCTCCTGTTATAAACAAACCTCCTCAGAAAAGACAGCGTGCCCCATCAGTTTACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCAAAATCCTCAAATGACTCACAAGGAGGCCTTCAGAACAGCCGCAAAAAATTGGGCAAATTTCCCTCCAATCCAAGAAAGAGAAGGCACAGAAAGCTGTAATCAGATTGAGGAAACTGGAATTTGGAACCCTCAAACTCCCGAGGTTCACAAAGATGGAAAGTGTTACCCAAGGCATTCAGTTTTGACATAA 606 43.23 MNHLFELPEQICYVQCGVCTTILLVSVPFSSLSMAVMVTCGHCSSLLSVNMMKATLVPLHFLSSLYHNVPKEDCGDMNSGNFFESVKRSSNLKFSEYEIEEGLIPVTPPVINKPPQKRQRAPSVYNCFIKDEIRRLKAQNPQMTHKEAFRTAAKNWANFPPIQEREGTESCNQIEETGIWNPQTPEVHKDGKCYPRHSVLT 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4824311 4826407 + Sed0013376.1 Sed04g0622 709225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0622 201 PANTHER PROTEIN YABBY 6-RELATED 8 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
Sed04g0622 201 Pfam YABBY protein 8 163 IPR006780 GO:0007275(InterPro)
Sed04g0622 201 CDD HMG-box_SF 120 166 - -
Sed04g0622 201 Gene3D High mobility group box domain 111 173 IPR036910 -
Sed04g0622 201 SUPERFAMILY HMG-box 105 161 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0622 Sed-Chr4:4824311 Sed05g0986 Sed-Chr5:8360224 1.50E-31 dispersed
Sed03g2674 Sed-Chr3:42997721 Sed04g0622 Sed-Chr4:4824311 1.30E-27 wgd
Sed04g0622 Sed-Chr4:4824311 Sed06g1650 Sed-Chr6:41269917 4.00E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38051 PF04690 YABBY 4.30E-55 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0622 K25796 - csv:101211641 328.946