Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3308 ATGGCATCCTTCTCATCCTCCTTCGCCGGATCTTCCTTTTCCTCTTCTCCGATCGAAGCATCTCGTTCTGAGTTGTCGCCGGCTAATTTCCCGAAGGGGAGATCTTTGACGCTTCAATCTGGTATTTTTGGAAATACTGTTTCGAGTGGGGCGTCTTCGTTTCAGTTAAGGTTGTCTAAAAATCGAACCATACAACCGTTCAAAGCTACGGCCACCGAGGCACCTCCGACGGTTCAAAAAACACCGAGCGGTGGGAAGACCAAGATTGGAATCAATGGTTTCGGACGAATTGGAAGACTTGTCTTACGAATTGCAACCTTGAGGGATGATATTGATGTTGTAGCAGTTAATGATCCATTTGTTGACGCTAAGTACATGGCTTACATGTTCAAATATGATTCTACTCATGGCGTTTTCAATGGAACCATCAAGGTTGTGGACGATTCAACCTTGGAAATCAATGGGAAGCAAATCAAAGTTGTAAGCAAAAGGGACCCTGCTGAGATCACTTGGGGTGATTATGGGGCTGAATATGTTGTTGAATCTTCTGGAGTTTTCACTACAAGAGAGAAGGCTGCAGCACACTTAAAGGGTGGTGCTAAGAAAGTGGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGCGTTAATGAAAAAACTTATAAGCCAACGATGGATGTTGTCTCCAACGCAAGTTGTACTACCAATTGTCTTGCACCTCTTGCAAAGGTCGTTCATGAGGAATTTGGTATTGTTGAAGGTCTAATGACTACAGTGCATGCAACGACAGCAACACAAAAGACTGTCGATGGTCCCTCAATGAAGGATTGGAGAGGAGGCCGTGGTGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGTAAAGTTCTTCCAGAGCTAAATGGTAAGCTAACTGGTATGGCTTTCCGTGTTCCAACACCCAATGTTTCTGTTGTGGACTTAACTTGCCGACTCGAAAAAAGGGCTTCATATGAAGATGTCAAGGCAGCAGTAAAGTATGCATCTGAAGGTCCATTGAGAGGTATTCTTGGATACACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCAAGGTCAAGTATATTTGATGCAAAGGCTGGAATAGGTCTCAGTACCTCGTTCGTGAAGCTTGTGACTTGGTACGACAACGAATGGGGATACAGCAACCGAGTCCTGGACCTGATCGAGCACATGGCATTTGTTTCAGCCTTGAACTAA 1269 44.68 MASFSSSFAGSSFSSSPIEASRSELSPANFPKGRSLTLQSGIFGNTVSSGASSFQLRLSKNRTIQPFKATATEAPPTVQKTPSGGKTKIGINGFGRIGRLVLRIATLRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVVDDSTLEINGKQIKVVSKRDPAEITWGDYGAEYVVESSGVFTTREKAAAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKRASYEDVKAAVKYASEGPLRGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSTSFVKLVTWYDNEWGYSNRVLDLIEHMAFVSALN 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42442831 42447893 + Sed0009028.1 Sed05g3308 715934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3308 422 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 235 398 - -
Sed05g3308 422 SMART gp_dh_n_7 87 236 IPR020828 GO:0051287(InterPro)
Sed05g3308 422 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 241 398 IPR020829 GO:0016620(InterPro)
Sed05g3308 422 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 88 410 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Sed05g3308 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 314 331 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 230 248 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 257 273 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 354 369 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 195 208 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 234 241 IPR020830 GO:0016620(InterPro)
Sed05g3308 422 Gene3D - 88 415 - -
Sed05g3308 422 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 88 188 IPR020828 GO:0051287(InterPro)
Sed05g3308 422 FunFam Glyceraldehyde-3-phosphate dehydrogenase 87 246 - -
Sed05g3308 422 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 86 252 IPR036291 -
Sed05g3308 422 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 82 416 IPR020831 GO:0016620(InterPro)
Sed05g3308 422 Gene3D Dihydrodipicolinate Reductase; domain 2 236 402 - -
Sed05g3308 422 FunFam Glyceraldehyde-3-phosphate dehydrogenase 235 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1835 Sed-Chr5:31873346 Sed05g3308 Sed-Chr5:42442831 1.20E-147 dispersed
Sed05g1836 Sed-Chr5:31873346 Sed05g3308 Sed-Chr5:42442831 7.80E-154 dispersed
Sed05g3308 Sed-Chr5:42442831 Sed13g2208 Sed-Chr13:26579400 4.70E-88 dispersed
Sed03g0748 Sed-Chr3:4494562 Sed05g3308 Sed-Chr5:42442831 6.10E-139 transposed
Sed08g2455 Sed-Chr8:37504487 Sed05g3308 Sed-Chr5:42442831 9.00E-136 transposed
Sed11g2233 Sed-Chr11:35795840 Sed05g3308 Sed-Chr5:42442831 1.20E-139 transposed
Sed05g1834 Sed-Chr5:31873346 Sed05g3308 Sed-Chr5:42442831 1.10E-187 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3308 K00134 - csv:101203472 736.487