Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0407 | ATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCGGCGACTGTGATTTGTTGCGCCGATGAAGCGGCGCTTTGTGCGAAGTGCGATGTTGAAGTTCATGCTGCTAACAAGCTTGCCAGTAAGCACCAGCGGCTTCTTCTTCAGTGTCTCTCCACTAAGCTTCCCAAATGCGATATTTGTCAGGACAAGCCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGACTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCTTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACTAAGGATATCGACAAGGTCAAAATGGAACCACCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTCCACAACAAGTTCCTAACTTCACGTCGACGTCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATGTCGAGTCCTCTGACAAGGAGAAAGAACATCTAGAGTTTGGAGAACTCGAATGGCTAGCAGAAATGGGCCTCTTCGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCGGGTGGTGCATTTGCATGCAGACCGACAAAGTCGAGCATGTCATACAAGAAGCCACGGATCGAGGTGGTAGACGATGAAGAGTTTTTTACAGTTCCTGATCTTGGATGA | 720 | 47.78 | MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDIDKVKMEPPNPKNPQVPAKMPPQQVPNFTSTSPWAVDDFLHFSDVESSDKEKEHLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGGAFACRPTKSSMSYKKPRIEVVDDEEFFTVPDLG | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3899150 | 3903738 | + | Sed0011509.1 | Sed09g0407 | 725171 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0407 | 239 | Gene3D | Classic Zinc Finger | 1 | 120 | - | - | |
Sed09g0407 | 239 | CDD | Bbox1_BBX-like | 56 | 98 | IPR049808 | - | |
Sed09g0407 | 239 | Pfam | B-box zinc finger | 3 | 45 | IPR000315 | GO:0008270(InterPro) | |
Sed09g0407 | 239 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270(InterPro) | |
Sed09g0407 | 239 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
Sed09g0407 | 239 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 238 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
Sed09g0407 | 239 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
Sed09g0407 | 239 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Sed09g0407 | 239 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
Sed09g0407 | 239 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1531 | Sed-Chr4:30130908 | Sed09g0407 | Sed-Chr9:3899150 | 6.20E-34 | dispersed | |
Sed09g0407 | Sed-Chr9:3899150 | Sed11g1069 | Sed-Chr11:26168050 | 4.80E-29 | dispersed | |
Sed09g0407 | Sed-Chr9:3899150 | Sed13g0634 | Sed-Chr13:4329231 | 1.10E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39526 | PF00643 | zf-B_box | 1.50E-08 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0407 | - | - | - | 0.0 |