Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0407 ATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCGGCGACTGTGATTTGTTGCGCCGATGAAGCGGCGCTTTGTGCGAAGTGCGATGTTGAAGTTCATGCTGCTAACAAGCTTGCCAGTAAGCACCAGCGGCTTCTTCTTCAGTGTCTCTCCACTAAGCTTCCCAAATGCGATATTTGTCAGGACAAGCCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGACTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCTTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACTAAGGATATCGACAAGGTCAAAATGGAACCACCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTCCACAACAAGTTCCTAACTTCACGTCGACGTCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATGTCGAGTCCTCTGACAAGGAGAAAGAACATCTAGAGTTTGGAGAACTCGAATGGCTAGCAGAAATGGGCCTCTTCGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCGGGTGGTGCATTTGCATGCAGACCGACAAAGTCGAGCATGTCATACAAGAAGCCACGGATCGAGGTGGTAGACGATGAAGAGTTTTTTACAGTTCCTGATCTTGGATGA 720 47.78 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDIDKVKMEPPNPKNPQVPAKMPPQQVPNFTSTSPWAVDDFLHFSDVESSDKEKEHLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGGAFACRPTKSSMSYKKPRIEVVDDEEFFTVPDLG 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3899150 3903738 + Sed0011509.1 Sed09g0407 725171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0407 239 Gene3D Classic Zinc Finger 1 120 - -
Sed09g0407 239 CDD Bbox1_BBX-like 56 98 IPR049808 -
Sed09g0407 239 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Sed09g0407 239 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
Sed09g0407 239 CDD Bbox1_BBX-like 5 47 IPR049808 -
Sed09g0407 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 238 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Sed09g0407 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Sed09g0407 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed09g0407 239 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Sed09g0407 239 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1531 Sed-Chr4:30130908 Sed09g0407 Sed-Chr9:3899150 6.20E-34 dispersed
Sed09g0407 Sed-Chr9:3899150 Sed11g1069 Sed-Chr11:26168050 4.80E-29 dispersed
Sed09g0407 Sed-Chr9:3899150 Sed13g0634 Sed-Chr13:4329231 1.10E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39526 PF00643 zf-B_box 1.50E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0407 - - - 0.0