Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan01g3463 ATGATGGATGTGAACGGGAATAAACCTTCGAAACCTGTTCGAAGAAGTTCGTCTCAGAAGGAAAGTGAAAATGGAAGCCAAGTAGTTGTGGAAATTAGCAGCGTTGTGTCTTCCAAAGAAACCAGAGATGAAAATGGCTACTCAATACCGAAGCAAAACAGAGTTGATTCACAAACCAAAGAGCCGATGGATTCGAGCATTGGCTATGGCTACGATTCACATCCCGCTCCGACTGTGAATAAGCCCCCGAAAATCCCCAGTTCAATTGGAACCCTCAAGCCTAGAAAATCTCTTAAAAGATCAATCCTCTCGAAAACCAAATCCAGATTTGGGGAACAGCCATATTACATCGATTCAGATATGCTTGAGGAGAATCATTTGTCATTGAGAGATCAAATTGGTGCAACTTCGTCCAGACGCTCCACTCTTAACACGGCGAAGGAACAACCTGAAGAAGAAGATGATGAGGAAATCTACAAGACAGAACAGTTGAACAAAGAGAGGCATAAGAAAGTGAAGGTAAAGACATTGATTAAGTGGGTTGGATTTTTTTGCATCATTGGTTGCTTGGTGGCTAGCTTGACTGTTGACCGTTTGAAGAATTGCTTCCTTTGGGGTTTGAAGGTTTGGAAATGGTGTTTGCTTGCTACTGTGATTTTGTGTGGAATGATATTTACTCATCGGTTTATGAATGTGATTGTGTTTTTGATTGAGAGGAACTTTTTGCTTAGGAAAAAAGTGTTTTATTTTGTTCATGGGTTGAAAAAAAGTGTCCAAGTGACCCTTTGGTTGACATTGGTTCTTGTTACATGGGTGTTGTTGTTCGATCGGAATAGTCATAGGATCTTGAGATCGAGGACCACTCAGAAGATTTTGGATGCTGTTACATGGACTCTGGTAACCCTTCTAATAGGGGCATTTTTGTGGTTGATAAAGACATTGTTGCTGAAAATACTGGCGTCCAAGTTTCATATGAACCGATTTTTCGACAGAATTCAGGAATCCATTTTCCATCATCATGTTCTACAGACCCTCTTGAGCCCTTCGATGATTGGTATGGCTGAAGAGTCCAGCAGTGGTCGATTGACTTTGAAGGGTAAAAAATCAGACCATAAAAAGGTGATTGACATGGGAAAGATTCACCAGCTGAAGCGAGAGAAGGTTTCAGCTTGGACAATGAAGGTGTTGGTCGATGCAGTTACAAGTTCGGAGATGTCGATCTCACAACTACTCGATGAAAGCTACCAGAATGTTGCTGATGGAGAGATCGCCGATGAGATGGAAGTTGCCAGAAATGCTGCCTACATGATCTTCAACAATATTGCTCTTCCTGGAAACAGGTTCATAGAGGAAGAGGATCTTCTGAAAGTCATGATCAAAGAAGAAATTGATCTTGTGTTACCACTCTTTGAGGTAGATGAGATGAGGAGGATTGACAGGAAAGCTCTAACAAATTGGGTGATGAAGGTTTATCAAGAGAGGAAAACACTAGCACATGCCTTGAAAGACACCAAAACTGCTGTGAAGCAACTGAATAATTTAGTAACAGCGCTTCTTATAATAGTAACAGCTATTATTTGGCTTCTGTTGATGGAAATTGCTACAACCAAAGTACTCGTCTTTCTTCTATCTCAACTTGCAGTGGCAGCTTTCATGTTCGGAAACACTTGCAAGACTATATTCGAAGCTCTAATCTTCGTGTTTGTTATGCATCCATTTGATGTTGGGGACCGTTGTTCTGTCGATGGTGTCCCGTTGTTGGTTGAAGAAATGAACATCTTGACAACAGTCTTCTTGAAACTCACCAATGAGAAGGTGTATTATCCCAACTCAGTTTTGGCAACAAAGTCCATCACTAATTACTACAGAAGTCCAGACATGTGCGACACCATAGAATTCTCGATCGGTTTCACAACGCCACTGGAGAGGATTGGGGTCATGAAAGAGAGAATAAAGAGGTATTTGGAGAAGAATCCACAACACTGGCATCCAAATCATAGTGTGGTGGTGAAGGAGATTGAAGACGTGAATAAGATAAAGATCGCTCTTTATGCAAACCACACCATGAATTTTCAAGATTGGGTCGAGAAGAACCGACGAAGAACCGAGCTCGTGATGGAGTTGAAGAAAATTTTCGAAGAACTGAAGATCAACTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCTGTGGAAGGGCACTGA 2205 41.5 MMDVNGNKPSKPVRRSSSQKESENGSQVVVEISSVVSSKETRDENGYSIPKQNRVDSQTKEPMDSSIGYGYDSHPAPTVNKPPKIPSSIGTLKPRKSLKRSILSKTKSRFGEQPYYIDSDMLEENHLSLRDQIGATSSRRSTLNTAKEQPEEEDDEEIYKTEQLNKERHKKVKVKTLIKWVGFFCIIGCLVASLTVDRLKNCFLWGLKVWKWCLLATVILCGMIFTHRFMNVIVFLIERNFLLRKKVFYFVHGLKKSVQVTLWLTLVLVTWVLLFDRNSHRILRSRTTQKILDAVTWTLVTLLIGAFLWLIKTLLLKILASKFHMNRFFDRIQESIFHHHVLQTLLSPSMIGMAEESSSGRLTLKGKKSDHKKVIDMGKIHQLKREKVSAWTMKVLVDAVTSSEMSISQLLDESYQNVADGEIADEMEVARNAAYMIFNNIALPGNRFIEEEDLLKVMIKEEIDLVLPLFEVDEMRRIDRKALTNWVMKVYQERKTLAHALKDTKTAVKQLNNLVTALLIIVTAIIWLLLMEIATTKVLVFLLSQLAVAAFMFGNTCKTIFEALIFVFVMHPFDVGDRCSVDGVPLLVEEMNILTTVFLKLTNEKVYYPNSVLATKSITNYYRSPDMCDTIEFSIGFTTPLERIGVMKERIKRYLEKNPQHWHPNHSVVVKEIEDVNKIKIALYANHTMNFQDWVEKNRRRTELVMELKKIFEELKINYNLLPQTVHLFPVEGH 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 99949559 99952966 + Tan0022834.1 Tan01g3463 740887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan01g3463 734 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 17 728 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Tan01g3463 734 FunFam Predicted mechanosensitive ion channel 572 621 - -
Tan01g3463 734 PIRSF Memb_At2g17000 3 732 IPR016688 -
Tan01g3463 734 SUPERFAMILY Sm-like ribonucleoproteins 562 621 IPR010920 -
Tan01g3463 734 MobiDBLite consensus disorder prediction 136 158 - -
Tan01g3463 734 Pfam Mechanosensitive ion channel, beta-domain 565 622 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan01g3463 734 MobiDBLite consensus disorder prediction 19 43 - -
Tan01g3463 734 MobiDBLite consensus disorder prediction 50 64 - -
Tan01g3463 734 Gene3D - 572 621 IPR023408 -
Tan01g3463 734 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan01g3463 Tan-Chr1:99949559 Tan09g1102 Tan-Chr9:63336187 5.10E-184 dispersed
Tan01g3463 Tan-Chr1:99949559 Tan05g1092 Tan-Chr5:9643270 9.40E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan01g3463 K22048 - csv:101217197 1057.74