Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tan02g0015	ATGTTCCATCCGAAGAAAGCGTCGAGTAATATGAATAATTCTCATGAGAGAGCAGCAGCTGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGTTGGACTGTCGAGCTTCATGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAAACCATCATGAGAGTTATGGGTGTAAAAGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAATTCAATGATCACTCAATTAAGGATGGTATGAGAGCTTCAGGTCTTGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAATGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGCGAAGATTACACGAACAATTAGAGGTACAAAGACACTTGCAGTTGCGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAGAAGGCTTGTCAAACCCTCGCCGGTGAAAACATGGCAGCTTCCGGCGGGGGATACAAGGCCATGGGTGGCAATATCCCAAATAATAATAACGGACAGGGCGGTGGCATTGGGGACATGGGCGGAGGAGCTGGCATCAAAGATTTTGGATTCCCTTCTTTTCAAGACCTCAACCTCTATGGATCAGGAAGCGACCAGCTCGACCTTCAGCAAAACGTGGACGGATTCATGGCTCACAATGAAAGCTTACTGTGCTTGGGAAAGAAGAAGCCGAGGCCACCGCCGGCAAATTACGGATCGGGAAAAGGTGCGTTGGACTGGGCGGATGATCTCCGGCTGCAAGACATAGGAATGGCGCCGCCGTCGCAAGAAGATGATGATCATTTCAAAGCTGGCATTGGTGCAACGCTGGTGGAAAGAGATCATTTGGAGGAAATGTATGAGGCCAAGCCAGTGGTGTCGGATGACACTGCGCCCTTAAAGCTTCAGAGGCCGTCGCCCAGAAGGACACCCCTTTCGGCGGATAGACCCAATCAGCCTCTTACCAGCGCTCCTCAGCCCACACTTTCACCTTTTGGTTAA	1110	50.9	MFHPKKASSNMNNSHERAAAGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGGYKAMGGNIPNNNNGQGGGIGDMGGGAGIKDFGFPSFQDLNLYGSGSDQLDLQQNVDGFMAHNESLLCLGKKKPRPPPANYGSGKGALDWADDLRLQDIGMAPPSQEDDDHFKAGIGATLVERDHLEEMYEAKPVVSDDTAPLKLQRPSPRRTPLSADRPNQPLTSAPQPTLSPFG	369

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	571209	573821	-	Tan0003439.2	Tan02g0015	742641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tan02g0015	369	MobiDBLite	consensus disorder prediction	323	369	-	-
	Tan02g0015	369	Pfam	Myb-like DNA-binding domain	39	89	IPR001005	-
	Tan02g0015	369	Gene3D	-	36	94	-	-
	Tan02g0015	369	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	9	199	IPR046955	GO:0003700(InterPro)
	Tan02g0015	369	FunFam	Myb family transcription factor	36	94	-	-
	Tan02g0015	369	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	37	92	IPR006447	GO:0003677(InterPro)
	Tan02g0015	369	SUPERFAMILY	Homeodomain-like	36	92	IPR009057	-
	Tan02g0015	369	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	34	94	IPR017930	-
	Tan02g0015	369	MobiDBLite	consensus disorder prediction	348	369	-	-
	Tan02g0015	369	Pfam	MYB-CC type transfactor, LHEQLE motif	137	182	IPR025756	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Tan02g0015	Tan-Chr2:571209	Tan05g0577	Tan-Chr5:4195205	1.60E-82	dispersed
	Tan02g0014	Tan-Chr2:571209	Tan02g0015	Tan-Chr2:571209	3.10E-195	tandem
	Tan02g0015	Tan-Chr2:571209	Tan02g0016	Tan-Chr2:571209	1.00E-153	tandem

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	26636	PF00249	Myb_DNA-binding	2.00E-06	CL0123	Tan	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tan02g0015	-		-	-	0.0