Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0025 ATGCATAAATTAAGCAGAGGACACCGAGATAAACTCCAGCAGTTTATGGCTATAACTGGTACAAGTGAAAAGGTTGCTCATCAGGCCCTGAAGGCTAGTGAGTGGCATCTTGAAGGAGCTATTGATGTATTTTACAGTCAACCCCAAATCAAAGCATTCACCGACTCTAGACATTTGGAAGAGCTTTATAACAGATATAAAGATCCATATGTCGATATGATATTGGCTGATGGTATCTCACTGCTCTGCAATGACCTTCAGGTGGATCCTCAAGATATAGTTATGTTGGTTGTTTCTTGGCATATGAAGGCGAACACAATGTGTGAGTTTTCCAAACAGGAGTTTATAGGTGGATTACAAGCACTAGGGATAGATTCTCTGGAGAGGTTCCGAGAAAGGATACCATATATGCGGTCTGAGTTGAAAGACGAACAAAAGTTCCGTGATATTTACAACTTCGCATTTGGTTGGGCAAAAGAAAAGGGGCAAAAATCTTTAGCGTTGGACACTGCAATTGGAATGTGGCAGTTGCTATTTGCTGAAAAGCAGTGGCCCCTGGTTGACCACTGGTGTCAGTTCTTGCAGGCTCGGCATAATAAAGCTATTTCTAGGGACACATGGTCTCAACTTCTGGAGTTTGCAAGGTTACACCCAAGAAAGTTTGCAGGGTTCCTCTCTTTGGGTGTCAGTGGCGAAACTATGTTGTAA 708 42.66 MHKLSRGHRDKLQQFMAITGTSEKVAHQALKASEWHLEGAIDVFYSQPQIKAFTDSRHLEELYNRYKDPYVDMILADGISLLCNDLQVDPQDIVMLVVSWHMKANTMCEFSKQEFIGGLQALGIDSLERFRERIPYMRSELKDEQKFRDIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQARHNKAISRDTWSQLLEFARLHPRKFAGFLSLGVSGETML 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 613298 621578 + Tan0008758.2 Tan02g0025 742651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0025 235 Gene3D - 5 47 - -
Tan02g0025 235 Pfam Cullin binding 131 216 IPR005176 -
Tan02g0025 235 PANTHER RP42 RELATED 24 216 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Tan02g0025 235 CDD UBA_DCNL 8 48 - -
Tan02g0025 235 Gene3D - 53 142 - -
Tan02g0025 235 FunFam Defective in cullin neddylation protein 53 142 - -
Tan02g0025 235 Pfam UBA-like domain 10 48 - -
Tan02g0025 235 FunFam DCN1-like protein 3 143 224 - -
Tan02g0025 235 SUPERFAMILY UBA-like 5 46 IPR009060 GO:0005515(InterPro)
Tan02g0025 235 Gene3D Cullin, PONY binding domain 143 227 IPR042460 -
Tan02g0025 235 FunFam Defective in cullin neddylation protein 6 47 - -
Tan02g0025 235 ProSiteProfiles DCUN1 domain profile. 54 235 IPR005176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0024 Tan-Chr2:613298 Tan02g0025 Tan-Chr2:613298 1.90E-125 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0025 K17822 - csv:101216476 427.943