Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tan02g0642 ATGGATACGCTTAAGAAATCCTTCAAAAGCAATGTATCTTTCAAGCATACCAGGAAGATTTCTGCTGGTGGAACCGGTAGCGAAATCAATCACGAGGAGCTCCCCATTCTTCTCGATCACGAACCTACGGATAATCGTAATCGTCACAGGGATCGTCGCTCGGTGAATGATTGTGAACCATCTGACCGCACGGAGGTCATTCTCAAGATCGATGATGGCGGTTCTTCGGCTGTCTCCAGATCTATGGACTCTGACGGCAATGGCGGGAAGGTTTGGCGGGAATCCAGGTACGATTTCTGGAACAAAAATGATGGAATTGGGATTGGGGAAAGTGCGAGTAGGACTAGTGGTGCGAGAGCGAGTGATAGTGGTGATAGAAATGAGGGATTTGAATTTGTACAGCGTGGTTATGGTATGGATGATCCGCCGACGAGACTGATTGGTGAGTTTCTTCATAAGCAAAAAATTAGAGGCGAAACGGCTTTGGATATGGATTTGGAAATGGAGGAGCTGCGGCCGGATAGGATTATAACTCCTATGGCGGAGTCGCCGTTGAGTGGGACTTCTAAGGATCTTAAGGTTTCGTTTCAACCGGGTTCGACTGAGATTTCGAGCAATGAGTCGTTTCGAAGGCGGTATAAAGACTCCCGCGATTTTCAAGAAGAGTGCAAAGGAGGGCAATCACCATGGCAACAATCGCACCATGAACGTCGTGGTTCTTCGACTGTCTCTGGTGTTCAGAATGATTCTGTTGCTGAGGCTATGAGGTGTACATCTAACTTGTCTTTTCAGAGCGAGCTTTCGTTTCAGAGGAAATCAAATTTGCTCAGGGCGAAAACCAAGTCGAGATTGATAGACCCGCCTGCAGAACCAGACCACCTCTCCGGCCTCATTAAATCGGGACAGTTACGATCAGGGTTTCTCGGCAAGATTGACGACGACGATGACGACCCTTTTCTGGAGGACGACCTTCCAGACGATTTTAGAAGGGGCAAGTTCGATGCTCTAACTGTGCTGCAATGGGTCAGTTTGATTATAATCACTGCGGCTTTGGTTTGCACTCTTTCTATTCCTTATTTGAGGGCAAAGAGGCTCTGGGAGTTGGATTTATGGAAATGGGAGGTGATGATTTTGGTACTGATTTGCGGACGATTGGTATCTGGTTGGGGGATTAGAATCGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTCTGTATTTCGTATATGGGGTTCGGAAGCCAGTACAGAATTGTCTATGGTTAGGCCTTGTTCTGATCGCTTGGAATTTGTTGTTTAATAAGCGGGTTGAGAATCACACCAACAGCAATATACTTAATTTTGTGAGGAAAATCTTAGTGTGTCTCTTGGTAAGCACATTGATTTGGCTAGTGAAAACCCTGATGGTGAAGGTGCTTGCATCTTGTTTCCATGTGAGCACATACTTCGATAGAATTCAGGAATCGTTGTTTAACCAATATATAATTGAGACGCTCTCAGGGCCACCACTGATTGAAATTAAGAAGAATGAGGAAGAAGAGGAGAGGATTGCCGCTGAAGTCCAGAAATTACAGAATGCAGGAATTACCATACCCCCTGATCTCAAGGCAGCAACCTTCGCTTCTATAAAGAGTGGAAGGGCGATAGGCAGCGGGGGGACCCAAAAAAGTTCTTGTGGAAAAAGTTCCAAACTCTGTCGAGCACTTACTAAAAATGGAAACGATGGAATAACAATTGACCACTTGCACAAACTAAGTCCGAAGAATGTATCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAACAGATACCGGGGCCGTGTCTTGATGATGAATCTACTAGAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCGAAGAAGATTTTTCAGAACGTGGCTCGGCGAGGGTTCAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGACGAGGTTTTTAAAATCATGAGTCTCTTTGAAGGAGCAACTGAAAGCTGGAGAATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGGAGAGCCCTAGCTTTAACATTGAATGATACCAAAACAGCTGTTCATAGACTGCACCGTATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTCATAGTACTAGGAATTGCCACCAGCAAATTCTTCCTCTTCGTTAGTTCTCAAATAGTGGTTGTGGCATTCATTTTTGGGAACACTTTAAGGACCATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCATTTGATGTCGGAGATCGATGTGAAATCGATGGAATGCAGATGATTGTAGAAGAAATGAACATCTTGACTACTGTGTTCTTGAGATACGACAACCTGAAGACTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCCACAACTTCTATCGTAGTCCCGACATGGGTGAATCTGTTGAATTCTGTGTCCATATAGCAACGCCAGCTGAGAAACTTGCTGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCCACAAAGAACACTGGTGTCCTTCTCCTATGATTGTGTTCAAGGATGTAGAAGGTTTAACCATGCTAAGACTGGCAGTCTGGCTGTCACACAGAATGAACCACCAAGACTCGGGGGAAAGATGGGCTCGGAGGTCCGTCTTGGTCGAAGAGGTCGTGAAGATCTGTCAAGAGTTTGACATTCAGTACCGTCTGTTGCCCCTCGATATCAATATCCATTCACTGCCTTCTTCTGCACCCTCCATTGCCTTTCCATCTAATTGA 2853 44.3 MDTLKKSFKSNVSFKHTRKISAGGTGSEINHEELPILLDHEPTDNRNRHRDRRSVNDCEPSDRTEVILKIDDGGSSAVSRSMDSDGNGGKVWRESRYDFWNKNDGIGIGESASRTSGARASDSGDRNEGFEFVQRGYGMDDPPTRLIGEFLHKQKIRGETALDMDLEMEELRPDRIITPMAESPLSGTSKDLKVSFQPGSTEISSNESFRRRYKDSRDFQEECKGGQSPWQQSHHERRGSSTVSGVQNDSVAEAMRCTSNLSFQSELSFQRKSNLLRAKTKSRLIDPPAEPDHLSGLIKSGQLRSGFLGKIDDDDDDPFLEDDLPDDFRRGKFDALTVLQWVSLIIITAALVCTLSIPYLRAKRLWELDLWKWEVMILVLICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWNLLFNKRVENHTNSNILNFVRKILVCLLVSTLIWLVKTLMVKVLASCFHVSTYFDRIQESLFNQYIIETLSGPPLIEIKKNEEEEERIAAEVQKLQNAGITIPPDLKAATFASIKSGRAIGSGGTQKSSCGKSSKLCRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPCLDDESTREIKSEREAKAAAKKIFQNVARRGFKYIYLDDLMRFMREDEVFKIMSLFEGATESWRISKSALKNWVVNAFRERRALALTLNDTKTAVHRLHRMVNVIFGILILILWLIVLGIATSKFFLFVSSQIVVVAFIFGNTLRTIFEAIIFLFVMHPFDVGDRCEIDGMQMIVEEMNILTTVFLRYDNLKTIIPNSVLATKLIHNFYRSPDMGESVEFCVHIATPAEKLAAMKQRIISYIEGHKEHWCPSPMIVFKDVEGLTMLRLAVWLSHRMNHQDSGERWARRSVLVEEVVKICQEFDIQYRLLPLDINIHSLPSSAPSIAFPSN 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5908929 5913817 + Tan0015190.1 Tan02g0642 743268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tan02g0642 950 MobiDBLite consensus disorder prediction 108 122 - -
Tan02g0642 950 MobiDBLite consensus disorder prediction 225 247 - -
Tan02g0642 950 MobiDBLite consensus disorder prediction 15 88 - -
Tan02g0642 950 MobiDBLite consensus disorder prediction 207 222 - -
Tan02g0642 950 Pfam Mechanosensitive ion channel, beta-domain 768 828 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Tan02g0642 950 MobiDBLite consensus disorder prediction 182 206 - -
Tan02g0642 950 FunFam Predicted mechanosensitive ion channel 779 828 - -
Tan02g0642 950 SUPERFAMILY Sm-like ribonucleoproteins 769 828 IPR010920 -
Tan02g0642 950 MobiDBLite consensus disorder prediction 108 138 - -
Tan02g0642 950 PIRSF Memb_At2g17000 44 949 IPR016688 -
Tan02g0642 950 MobiDBLite consensus disorder prediction 180 247 - -
Tan02g0642 950 MobiDBLite consensus disorder prediction 33 69 - -
Tan02g0642 950 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 41 941 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Tan02g0642 950 Gene3D - 779 828 IPR023408 -
Tan02g0642 950 Coils Coil 510 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Tan02g0642 Tan-Chr2:5908929 Tan05g1093 Tan-Chr5:9643270 1.10E-234 dispersed
Tan02g0642 Tan-Chr2:5908929 Tan05g1092 Tan-Chr5:9643270 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tan02g0642 K22048 - csv:101207426 1534.24