Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g145 ATGCTTCTGCTACTGCTGTTGCTGGTTTCTCCTCTATTGGCTCTATCTATCAACCAGGAGGGTCTCTTCCTACAGCGAGTGAAGCAGGGTTTCGCCGACCCTACCGGAGCCTTATCCAACTGGAACGACCGCGACGACACCCCATGCAACTGGTATGGCGTCACCTGCGACCCCGAAACTCGGACAGTCAACTCACTCGACCTCTCCAACACTTACATTGCCGGACCTTTCCCCACGCTCCTCTGTCGTCTTCACGACCTCCATTCCCTCTCTCTCTATAACAACTCCATTAACTCCACACTGCCTGCCGACATTTCCACGTGTCAGAGTCTGGAGCACCTTAATCTCGGTCAGAACCTTCTCACAGGTGCCTTGCCATCCACTCTGGCCGACATGCCCAATCTCAGGCACTTGGATTTTACCGGGAATAACTTTTCCGGCGATATTCCGGAGAGTTTCGGCCGGTTCAGGCGATTGGAGGTTCTGTCTCTCAACAGCTTTTCCGGAACTATACCGGACGAAGTCGGTGGGTTGGAGAATTTAGTTGATTTTTCAGGCAGTGACAATCAATTTAGTGGACCCCTTCCGGCGAGTATTGTAAATCTTAGACAGCTTGGTAAACTTGATCTTCATAACAACAAGCTCTCTGGTGAGCTCCCGTCTGGGATTCACACTTGGAAGAAGCTCAATATGCTCAATTTAAGAAATAACGGGCTTTCAGGTGATATCCCCTCTTTGTATGCTAACAAAATTTACAGGGATAACTTTCTGGGTAATCCTGGTTTGTGTGGAGATCTTGATGGCTTGTGCAATGGCAGAGGTGAAGCTAAGAGTTGGGATTATGTGTGGGTGCTTCGATGCATCTTTATACTCGCCGCTGCAGTGTTAATTGTTGGTGTGGGTTGGTTCTATTGGAAGTATAGGAGTTTCAAGAAGGCAAAAAGAGCTATAGACAAATCAAAGTGGACATTGATGTCCTTCCATAAGTTGGGTTTCAGCGAATATGAGATCTTGGATTGCCTTGATGAAGATAATGTGATAGGGAGTGGAGGTTCAGGGAAGGTGTACAAGGCTGTTCTTAGCAATGGTGAGGCTGTTGCAGTGAAGAAGCTATGGGGAGGATCAAATAAAGGGAATGAAAATGGATTTGAAGCAGAGGTTGATACCCTGGGTAAGATTAGGCACAAGAACATTGTTAAGCTATGGTGCTGTTGCACCACTAAGGATTGCAAGCTTTTGGTTTACGAGTATATGCCTAATGGTAGCTTGGGCGATTTGTTGCATAGTAACAAAGGAGGATTGCTGGATTGGCCAACGAGGTATAAGATTGCTTTGGATGCTGCGGAGGGGCTCTCTTATTTGCATCATGATTGCGTTCCTCCTATTGTGCATAGGGATGTGAAATCGAATAATATTTTGTTGGATGGGGATTTTGGAGCCCGGGTTGCAGATTTTGGTGTAGCTAAGGTGGTTGATACAACTGGAAAAGGGCCTAAATCCATGTCTGTCATAGCTGGTTCTTGTGGCTACATTGCACCAGAGTATGCATACACACTTCGTGTGAATGAGAAGAGTGATTTATACAGCTTTGGTGTGGTTATTCTTGAGTTGGTCACAGGGAGACATCCGGTTGATGCTGAGTTTGGGGAGGACTTGGTGAAGTGGGTGTGCACAACTTTGGACCAGAAAGGAGTGGACCATGTGCTTGATCCCAAACTCGATTCCTGTTTCAAGGAAGAAATATGCAAGGTCCTCAATATAGGTATTCTATGCACCAGTCCCCTTCCCATAAACCGCCCCTCAATGAGAAGGGTAGTGAAGATGTTGCAGGACGTGGGAGGAGAAAACCAGCCCAAGCCTGTGAAAAAGGATGGGAAATTGTCGCCCTATTATCATGAAGATGCTTCTGATCAGGGAAGTGTAGTTTGA 1929 46.76 MLLLLLLLVSPLLALSINQEGLFLQRVKQGFADPTGALSNWNDRDDTPCNWYGVTCDPETRTVNSLDLSNTYIAGPFPTLLCRLHDLHSLSLYNNSINSTLPADISTCQSLEHLNLGQNLLTGALPSTLADMPNLRHLDFTGNNFSGDIPESFGRFRRLEVLSLNSFSGTIPDEVGGLENLVDFSGSDNQFSGPLPASIVNLRQLGKLDLHNNKLSGELPSGIHTWKKLNMLNLRNNGLSGDIPSLYANKIYRDNFLGNPGLCGDLDGLCNGRGEAKSWDYVWVLRCIFILAAAVLIVGVGWFYWKYRSFKKAKRAIDKSKWTLMSFHKLGFSEYEILDCLDEDNVIGSGGSGKVYKAVLSNGEAVAVKKLWGGSNKGNENGFEAEVDTLGKIRHKNIVKLWCCCTTKDCKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKVVDTTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDLYSFGVVILELVTGRHPVDAEFGEDLVKWVCTTLDQKGVDHVLDPKLDSCFKEEICKVLNIGILCTSPLPINRPSMRRVVKMLQDVGGENQPKPVKKDGKLSPYYHEDASDQGSVV* 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1617590 1621640 + Vvi10g145 Vvi10g145 770744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g145 642 Pfam Leucine rich repeat N-terminal domain 18 57 IPR013210 -
Vvi10g145 642 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 228 633 - -
Vvi10g145 642 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 162 245 - -
Vvi10g145 642 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 165 - -
Vvi10g145 642 Gene3D Phosphorylase Kinase; domain 1 313 417 - -
Vvi10g145 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vvi10g145 642 Pfam Leucine rich repeat 87 145 IPR001611 GO:0005515
Vvi10g145 642 Gene3D Ribonuclease Inhibitor 164 270 IPR032675 -
Vvi10g145 642 Gene3D Ribonuclease Inhibitor 17 163 IPR032675 -
Vvi10g145 642 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 3 165 - -
Vvi10g145 642 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 162 245 - -
Vvi10g145 642 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 228 633 - -
Vvi10g145 642 SUPERFAMILY Protein kinase-like (PK-like) 332 609 IPR011009 -
Vvi10g145 642 MobiDBLite consensus disorder prediction 617 631 - -
Vvi10g145 642 Gene3D Transferase(Phosphotransferase) domain 1 418 630 - -
Vvi10g145 642 ProSiteProfiles Protein kinase domain profile. 341 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g145 642 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Vvi10g145 642 SUPERFAMILY L domain-like 18 263 - -
Vvi10g145 642 MobiDBLite consensus disorder prediction 613 642 - -
Vvi10g145 642 SMART serkin_6 341 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g145 642 Pfam Protein kinase domain 343 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g145 Vvi12g248 ECH
Vvi10g145 Vvi19g428 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75965 PF00069 Pkinase 3.80E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g145 - - vvi:100267564 897.501