Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g153 ATGGAGGCGGATGAGAGTTATCGAAGGAAGGAGCGCACAGCGCTAGTTGCAATCGTGGTTCTGGCGTCTGTCGCCCTGGCGTCGTTGCTTGTCGCCTTCAGCTACTACTGCTACATCCGTAACAAGGTCTCCAGGCGCTTAAAGAACCAGAAAAGGATTGATTATGAGGATAAAGGTGGTTTTGCAAATCTCCAAGTTGCTACAGAGAAAGGGCTTCAGGTTTTCACTTTCAAGCAGCTACATTCTGCGACTGGTGGTTTTGGCAAATCTAATGTGGTTGGTCATGGTGGGTTTGGGTTGGTCTATCGAGGAGTGCTTCATGATGGTAGGAAAGTCGCTGTTAAGCTGATGGATCGGGCAGGAAAACAGGGAGAAGAGGAGTTCAAAGTGGAGGTGGAGTTACTAAGTCGGCTTCGATCTCCATATTTGCTGGCACTGCTTGGGTACTGTTCAGATAGTAACCATAAATTGCTGGTTTATGAGTTCATGGCAAATGGTGGACTGCAGGAGCATTTGTATCCCATCTCGGGTTCTAATTCTGTTTCTTCAAGGTTGGACTGGGAAACCCGGTTGAGGATAGCCCTGGATGCTGCCAAAGGTTTGGAGTATCTCCATGAACATGTCAGTCCCCCAGTGATCCACCGAGATTTTAAGAGCAGCAACATACTCTTAGACAAAAATTTCCATGCTAAAGTTTCTGACTTTGGATTGGCTAAACTTGGATCTGATAAAGCTGGTGGACATGTTTCCACCCGAGTGTTGGGCACCCAGGGATATGTTGCTCCTGAGTATGCATTAACTGGCCATCTGACAACAAAATCAGATGTGTACAGCTATGGGGTTGTCCTTTTGGAGTTGCTCACTGGCAGAGTTCCAGTGGATATGAAGAGAGCTTCTGGGGAAGGTGTTCTTGTATCTTGGGCTTTGCCCCACCTCACAGATAGAGAGAAGGTTGTACAGATAATGGATCCAGCACTGGAGGGTCAATACTCCATGAAAGAGGTTATTCAGGTGGCTGCTATAGCTACAATGTGTGTGCAACCAGAGGCAGATTATAGGCCATTGATGGCTGATGTTGTACAGTCACTGGTCCCACTGGTGAAGAATCACAGGCCAACTTCAAAGGTAGGCAGCTGCTCTAGTTTCCATGCAACCAAGTCTCCCCTTTCACAGGAGCCTGGAAAAGCAAGTTTGTGA 1197 47.45 MEADESYRRKERTALVAIVVLASVALASLLVAFSYYCYIRNKVSRRLKNQKRIDYEDKGGFANLQVATEKGLQVFTFKQLHSATGGFGKSNVVGHGGFGLVYRGVLHDGRKVAVKLMDRAGKQGEEEFKVEVELLSRLRSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPISGSNSVSSRLDWETRLRIALDAAKGLEYLHEHVSPPVIHRDFKSSNILLDKNFHAKVSDFGLAKLGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRASGEGVLVSWALPHLTDREKVVQIMDPALEGQYSMKEVIQVAAIATMCVQPEADYRPLMADVVQSLVPLVKNHRPTSKVGSCSSFHATKSPLSQEPGKASL* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2619610 2629896 - Vvi12g153 Vvi12g153 772676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g153 398 MobiDBLite consensus disorder prediction 371 398 - -
Vvi12g153 398 Pfam Protein tyrosine and serine/threonine kinase 91 363 IPR001245 GO:0004672|GO:0006468
Vvi12g153 398 PANTHER OS07G0227300 PROTEIN 3 394 - -
Vvi12g153 398 PANTHER OS01G0750732 PROTEIN 3 394 - -
Vvi12g153 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vvi12g153 398 ProSiteProfiles Protein kinase domain profile. 87 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g153 398 Gene3D Phosphorylase Kinase; domain 1 48 162 - -
Vvi12g153 398 ProSitePatterns Protein kinases ATP-binding region signature. 93 122 IPR017441 GO:0005524
Vvi12g153 398 MobiDBLite consensus disorder prediction 373 398 - -
Vvi12g153 398 CDD STKc_IRAK 93 366 - -
Vvi12g153 398 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
Vvi12g153 398 SUPERFAMILY Protein kinase-like (PK-like) 69 363 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g226 Vvi12g153 ECH
Vvi12g153 Vvi19g104 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76108 PF07714 PK_Tyr_Ser-Thr 3.40E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g153 - - vvi:100252390 764.992