Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1061 ATGGGCATGAAGGCCAACTGCATCGCCTTGATAAAGCAATGTGTCACCCTCGAAGCTCTCAAATCGCTTCACGCCTCCATCCTCAAATCCCACCTCCACCCCCACCTCTGTACCAGCCTCATTGCTCAGTACGCCTCTCTTGGCTCCATTTCTCACGCCTACGCCCTCTTTTCTACCTCCCATTCCTCAAATGTCTTCCTCTGGAACCACATCATCCGAGCCTTCTCAAACACTCCTCATTCCCGCAATTCCCTGCGTCTCTACTCTCGGATGCTACAACTGGGCATCCAAGCCACCAATTTTACCTTCCCTTTTCTTCTCAAGGCATGTGGGTGTCTTGCAGATTTTGAGTTGGGCGCTCGGGCTCATGCCCATGTGGTGGTTTTCGGGTATGAGTCGGATGTTTTTGTTGCTAATTCTCTGATGGCCATGTATGGTAGGTTTGGCTGTTTTGACTTTTCACGACAAGTGTTTGAAAGAATGCCTGAAAGAAATGTTGTTTCGTGGAGTTCAATGGTGGGAGCATACGCCCACAATGGTCGTTATGAAGAAGGGTTGCTGTTGTTTTGGAGGATGCTGAACGAGGGTATTGCGCCCAATAGGGGTTCCATAGTGAACGCGATGGCATGCATTCACAGGGAGCATGAAGCTGATGATTTTTGTAGGGTTGTGATTGATAATGGTCTCGATTCGGACCAGTCTGTGCAAAATGCTGCAATGGGGATGTATGCTCGATGCGGAAGAATAGATGTGGCTCGGCGATTTTTTTATGGGATTCTTGACAAGGATTTGGTGGCTTGGACTTCCATGATTGAAGCTTATGTTCAAGCTGATTTGCCCATCAATGCTTTGGAGCTTTTTAAACAGATGAAATTGCTAGGAATCGTCCCTGATTCTGTGACCCTTCTCAGTTTGATCCATGCTGTTTCAAATTTAGCATCTTTTCAGCTAGCTCGCTTTGTTCATGGGGTAATAACCCGGAGCTTCTTCAAAAATCACATTGCTCTAGACACTGCAGTGATTGATCTCTATGTGAAATGTGGAAACTTAGAATATGCTAGAAAATGTTTTGATAGGATGTCGGCAAGAAATTTAATTTCTTGGAGCACCATGATTTCAGGATATGGGATGCATGGCCATGGGAGAGAAGCTCTCTGCCTGTTTGATCAGATGAAGGCTTCAATAAAGCCAGACCACATTGCATTTGTAATGGTGTTGTCTGCCTGCAGTCATGGTGGACTGATTGCTGAAGGATGGGAATGCTTCAAAGCCATGAATAGAGATTTTGGGGTCACACCTAGAACTGAACATTATGCATGTATGGTTGATCTCTTAGGCCGAGCTGGGCGATTAAGCGAAGCTCAGGCATTCATTGAAAGAATGCCAATAACTCCGGATGCTGGAGTTTGGGGAGCACTACTTGGAGCATGTAGAATTCATTCAAATTTAGAAACAGCTGAGACAGCTGCAAGACATTTGTTCAATTTGGACGCAGAGAACCCAGGTCGGTACATCCTCTTGTCCAACATCTATGCTTCATCAGGCAAGAGAAAAGAAGCAGATGATATTAGAGCACTAATGAAAAGTAGAGGGGTGAGAAAAACTGTTGGCCACACAATTATAGAGATTAAGAACAAGGTGTATACATTTGTGGCTGGGGACACATCAAACCCACAAACAGATTTGATCTATTCCGAGCTGAGGAAGCTAATGGATAGAATTCAAGAAGCAGGATATGTGCCAGATTTGAGCTTTAAACTCTCGGTCTATGCAATTGTGTCTCTGGTGAGCGATGATCCCGATCAAAAACTGGAGCCGCACCACCAGCAGCAGCAGAGGACGCCTGCAGACAAGGAGGGAGATGGGAACCCGGAGTGGAATCACCTCATGGAATTCAATTTAATCGAGGGCTTTGGCCTCCACCACCTCTTTATCCATTTCGATCTGCGCTGCGAAGGCCTCGTGTTCGGAATCGGAGACAAAGCCCTCGGAGAAGTTCGCGTCCCCTTGGATGATCTCATCCAACCGGACTCCAACGGAATCATGAGGTTTGTGAGTTATCAGGTGCGTTCCGGCGACGGAAAACCAAATGGGGTTTTGAATTTCTCGTACAAAGCATATACATCCCCAGGAACAGGATCAATGCAACACCCGCCCCATCAGCCTTATTATCCACCACCACCACCACCACCACCTGGTTACTATCCACCACCTCCACCGTTACATCCACCACCACCGTTATTTCCGCCACCGCCACCGCTGCCGTACTACCAGCATCCTCCACATGGGGTACATTCATGGGGGCCCAACCCATACTGGGGTAGGTTTGATAGCTGA 2337 47.24 MGMKANCIALIKQCVTLEALKSLHASILKSHLHPHLCTSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMKASIKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVYTFVAGDTSNPQTDLIYSELRKLMDRIQEAGYVPDLSFKLSVYAIVSLVSDDPDQKLEPHHQQQQRTPADKEGDGNPEWNHLMEFNLIEGFGLHHLFIHFDLRCEGLVFGIGDKALGEVRVPLDDLIQPDSNGIMRFVSYQVRSGDGKPNGVLNFSYKAYTSPGTGSMQHPPHQPYYPPPPPPPPGYYPPPPPLHPPPPLFPPPPPLPYYQHPPHGVHSWGPNPYWGRFDS* 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24534255 24538272 - Vvi14g1061 Vvi14g1061 776128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1061 778 Pfam PPR repeat family 364 410 IPR002885 -
Vvi14g1061 778 Pfam PPR repeat family 262 309 IPR002885 -
Vvi14g1061 778 Gene3D Tetratricopeptide repeat domain 2 116 IPR011990 GO:0005515
Vvi14g1061 778 Gene3D Tetratricopeptide repeat domain 117 217 IPR011990 GO:0005515
Vvi14g1061 778 Gene3D Tetratricopeptide repeat domain 218 317 IPR011990 GO:0005515
Vvi14g1061 778 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 577 708 IPR035892 -
Vvi14g1061 778 Pfam PPR repeat 139 166 IPR002885 -
Vvi14g1061 778 Pfam PPR repeat 167 197 IPR002885 -
Vvi14g1061 778 Pfam PPR repeat 438 461 IPR002885 -
Vvi14g1061 778 Gene3D Tetratricopeptide repeat domain 338 547 IPR011990 GO:0005515
Vvi14g1061 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Vvi14g1061 778 SUPERFAMILY TPR-like 66 289 IPR011990 GO:0005515
Vvi14g1061 778 MobiDBLite consensus disorder prediction 711 755 - -
Vvi14g1061 778 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 561 - -
Vvi14g1061 778 CDD C2_SRC2_like 580 702 IPR044750 GO:0006952
Vvi14g1061 778 MobiDBLite consensus disorder prediction 600 623 - -
Vvi14g1061 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Vvi14g1061 778 TIGRFAM PPR: pentatricopeptide repeat domain 167 200 IPR002885 -
Vvi14g1061 778 TIGRFAM PPR: pentatricopeptide repeat domain 366 393 IPR002885 -
Vvi14g1061 778 TIGRFAM PPR: pentatricopeptide repeat domain 338 364 IPR002885 -
Vvi14g1061 778 TIGRFAM PPR: pentatricopeptide repeat domain 265 299 IPR002885 -
Vvi14g1061 778 Pfam E motif 480 542 IPR046848 -
Vvi14g1061 778 Gene3D C2 domain 553 681 IPR035892 -
Vvi14g1061 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 394 IPR002885 -
Vvi14g1061 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Vvi14g1061 778 MobiDBLite consensus disorder prediction 719 755 - -
Vvi14g1061 778 ProSiteProfiles C2 domain profile. 554 685 IPR000008 -
Vvi14g1061 778 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 561 - -
Vvi14g1061 778 Pfam E+ motif 547 574 IPR046849 -
Vvi14g1061 778 SMART C2_3c 569 682 IPR000008 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g77 Vvi14g1061 ECH
Vvi1g1375 Vvi14g1061 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1061 - K22733 vvi:100244618 832.787