Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1088 ATGATTTCAGCCTTTGCTGATCATCAAGATATTGGCTCCTGGGACAACAGGCTGGCTCATGGGTATCATGGGCAAGGAAGCCTGTTAGCCGCATCGGTGTCTAGCATGAGGCAGCATGGCTTATCTCAACCTCCCCAAGATCGAGGAAGAGAAGGGAGCGCAAGGAAAAGACATTATAGGGGAGTAAGACAGAGACCATGGGGCAAGTGGGCAGCCGAAATCCGAGACCCGAAGAAGGCTGCTCGAGTGTGGTTAGGCACCTTTGACACGGCAGAGGCCGCAGCAGCTGCTTACGATGCTGCTGCTCTCAATTTCAAAGGAACCAAAGCTAAACTCAACTTTCCTGAAAGATCTTCCCATATTGTCAAGGAAACTTTTCCAGCTTTCCACGTTGTACTTATTTGGATCCAAGAATTTATGTCACTTCTATCATTCCGGGATATGACTTTCAAGGCTTCTCCGTGTAGAAAATCGAAGTATCAATCCTTCAGCTTTCATTTCCGCTCTTTAACATGGAGATGGTTAAATTTTATTGTTATGCTACAAACTCAACAAGTCCTTACAAACAGATTTGCCGAACAAACTTGGTGA 591 45.85 MISAFADHQDIGSWDNRLAHGYHGQGSLLAASVSSMRQHGLSQPPQDRGREGSARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALNFKGTKAKLNFPERSSHIVKETFPAFHVVLIWIQEFMSLLSFRDMTFKASPCRKSKYQSFSFHFRSLTWRWLNFIVMLQTQQVLTNRFAEQTW* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 24814714 24817019 - Vvi14g1088 Vvi14g1088 776155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1088 196 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Vvi14g1088 196 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Vvi14g1088 196 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Vvi14g1088 196 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Vvi14g1088 196 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Vvi14g1088 196 Gene3D AP2/ERF domain 57 117 IPR036955 GO:0003700|GO:0006355
Vvi14g1088 196 PANTHER - 1 118 - -
Vvi14g1088 196 MobiDBLite consensus disorder prediction 34 58 - -
Vvi14g1088 196 PANTHER DNA-BINDING DOMAIN 1 118 IPR044808 GO:0003700|GO:0009873
Vvi14g1088 196 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Vvi14g1088 196 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1351 Vvi14g1088 ECH
Vvi14g1088 Vvi17g17 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13941 PF00847 AP2 9.20E-15 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1088 - - vvi:100266913 236.498