Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g518 ATGACGAGTCAGGTGGTGAAGGTACGGCGGGAGACAATAGCAGCATGCATGACATGCCCTCTTTGTAATAAGCTTTTGAAGGAAGCTACGACAATATCTCTATGTCTTCATACGTTTTGCAGGAAATGCATATATGAGAAGCTCTCAGATGAAGAGGTAGATTGCTGTCCTGTATGCAATATTGATTTGGGCTGTGTTCCTGTGGATAAACTCAGGCCTGACCACAATTTGCAAGATATAAGGGCCAAAATTTTTCCTTTCAAAAGAAGAAAGACCAGTGTTCCTGAAGTTATGCCTCCAATTCCACTGCCAGTTAAAAGGAAGGAAAGATCACTTTCATCTTTGGTCGTAAGCACTCCCCGAGTATCAATGCAGACTGGCTTGACCGGAAGGAGAACAAAAGCTGTTGCGAGAAAGAGTACTGCTCTACGAGGTTCCAGTTTTTCCATTGTGGAACCCATTAAGAAAGAGGAAGATTCTGTGGAAGATTGTCCAGAAAGCTCAAGCTCACCTGAGTCTCGAAACAAAGTTGCTCAAACTAAGAAGCAGAATTCTTCCATATCTGAAGCTTCAAAAGATCAAAAGCCTAATAAAGATACTGAGAATGATGCTGATCCATGGGATGGAAAAGTTGATCTGTGGACACCCTTAAACTGTCTTGTTGAAGCTGCAAACAGAACCAAGTCCTCTAAATTTAATTCTCAAGGGACGTCTCTTGCTAAGTCGGAACCATTTAATGCTCCTGACAGTGAAACCAAAATCAAGGAGCATGGACACAAAATAAAAGTTCAAGATGATAAGAATGGAGCGGCCTTGCTTCCAGGACCAGTGAAACGTAGAAGAATGCGTGCAGTGGGCCGAAAAAGAATATCTGCATCAGGGGAAATGTGCACCCCAGCACAAGTTGTGCTAAGTGCTGCAGGGGCCAAACGCGGCAGAAGAAATTGTCCAATTTGGTTCTCATTAGTTGCTTCTGAAAACCAGGGAGGAAATGGTCCCTTGTCAAAGATACCTGCATATTACTTGAGGGTAAAGGATGGTAACTTGCCTGTCTCATTTATTCAGAAGTACCTTGTAAAGAAACTTGATCTGACCAACGAAGCTGAGGTGGAGATAAGGTGCCAGGGTGAAGCAGTGGTTCCGACGCTGCAGCTGCAGAAGTTGGTGGAGCTATGGCTGCGAACAGCATCGACATCAAAAAGAGTGGCAACATCAGTAGGCACCTCAGCCAAGGAATTTGTGATGGTCTTGACATACACAAGGGTCCAAGCCCCTTGA 1278 44.29 MTSQVVKVRRETIAACMTCPLCNKLLKEATTISLCLHTFCRKCIYEKLSDEEVDCCPVCNIDLGCVPVDKLRPDHNLQDIRAKIFPFKRRKTSVPEVMPPIPLPVKRKERSLSSLVVSTPRVSMQTGLTGRRTKAVARKSTALRGSSFSIVEPIKKEEDSVEDCPESSSSPESRNKVAQTKKQNSSISEASKDQKPNKDTENDADPWDGKVDLWTPLNCLVEAANRTKSSKFNSQGTSLAKSEPFNAPDSETKIKEHGHKIKVQDDKNGAALLPGPVKRRRMRAVGRKRISASGEMCTPAQVVLSAAGAKRGRRNCPIWFSLVASENQGGNGPLSKIPAYYLRVKDGNLPVSFIQKYLVKKLDLTNEAEVEIRCQGEAVVPTLQLQKLVELWLRTASTSKRVATSVGTSAKEFVMVLTYTRVQAP* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7617606 7629338 + Vvi14g518 Vvi14g518 775585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g518 425 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 424 IPR044807 GO:0004842
Vvi14g518 425 MobiDBLite consensus disorder prediction 166 191 - -
Vvi14g518 425 MobiDBLite consensus disorder prediction 228 245 - -
Vvi14g518 425 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vvi14g518 425 SUPERFAMILY RING/U-box 14 84 - -
Vvi14g518 425 MobiDBLite consensus disorder prediction 154 209 - -
Vvi14g518 425 SMART ring_2 19 59 IPR001841 -
Vvi14g518 425 MobiDBLite consensus disorder prediction 228 249 - -
Vvi14g518 425 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Vvi14g518 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 110 IPR013083 -
Vvi14g518 425 MobiDBLite consensus disorder prediction 192 208 - -
Vvi14g518 425 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Vvi14g518 425 PANTHER UBIQUITIN PROTEIN LIGASE DRIP2, PUTATIVE-RELATED 1 424 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g29 Vvi14g518 ECH
Vvi5g608 Vvi14g518 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g518 K16277 - vvi:100241529 800.045