Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g716 ATGGAGAGTTGTGCAGAGATCGAGAATGGGCCAGTCGGTGATGTGGAAAACACGATTTTTGTGGCGGTTGGTAAGAGGGTGGAGAAGAGCAAAACGGCTCTGTTTTGGGCTGTGAAGAACTTTTCAGGGAAGAGAGTATGTGTACTTCATGTTCATCAACCTGAGAATACATACGCGTCCGTGAACAAAAAGGTTTCAGCTAACAAATTGAAACAACAAGCAGTCAAGGCTTCCTACGAACGTGAAAGGCAAAATATGATGAAACTTCTCAATCAATACCTCCTTATTCTTGCCCAAAAGGGGGTGCGGGCTTATAAACTGTGGATTGAAATGGAAAATATTGAGAAAGGGATTGTAGAAATCATTGCTCAGAAGAATATAAAATGGCTTGTTATGGGAGCTGCAGCAGATAAATATTATTCAAAGAAAATGGCTGAGCTCAAGTCCAAGAAAGCGATCTTTGTATGCCAACAAGCACCACTTTCCTGTCATATTTGGTTTGCTTGCAAGGGTTACCTCATTTACACAAGGGGAAGTAGACAGGTTGAAACTGAAATAGAGGTTTCTCCTCCTTTGCTGCTACTGAATAAAAATGTGGAGAGCAAGCAATCTGCGAACCTGATATCAGAATCTATTACATATAAGCAGAAATCCTTTGATTTGTCCTCCCTGAAGAGTACCGGAAGAATGATGTTACTACAGTACCATGCAAATACAGAAGAAAATGCTGATGAATGGGATGGAATGTCAAGAAGGTCCAGTTCTCCACGCCTATCGAGTTCAAATTGGTCAAACAAAGGAGAGGTTGACAGTTTACACTCTACCCTCTGTCCGAAGGATGAAGCACAAGAGGAAGATTCAATTTTACCCTCAGTACAAAAAGCCCATGATGGTCATCATTATTCACCATCTATTATTTTTCTGGACGAAAAAAATCAAGGACTGGCAACTGACGGAAGTTATGATAGACTAGAACCAGCCATTATGTTTACTAAAAACTCAAAGCAGGATGCATTTGAAGAGTCAGTTAAGCGATGGCAAGCAGAAGATGATGCCATGGAGGCCATACGCAAGGCCAAAGAAACTGAAACATTACACACCAAGCATATGAGCAAAAGGAAAGAACTGGAGGAAGAGCTAGCAAGAGGAAAGGAAGAAGTAGAAAGGATGAAGAATCAACAGGATGAACTCATGAAAGAACTCCAGATGGTCCAGGACCAGAGATCAATACTGGAGAGCCGAATTGCAGAATCACATTCATCAGAGAAGGAGTTGGAGGAGAAGATCATCTCAGCTGTGAAACTCTTGATAAGTATAAGGCAGAAACGGGATGAACTGCTAGTAGAGCACAAAGATGCAATTAGAGAAGTCAATGAACTAAGAGGATCAGTACAAGAGGAGGCTGCAAGCTTTTGCACACCACAGTTCTTGTCTTTCTCTTTCATGGAGATCAATGAAGCAACCAACAATTTTGATCCATCATGGAAGATTGGAGAAGGAAGTTATGGAAGTGTCTATAAAGGGGTTCTTCGCCACATGCATGTAGCTATAAAAATGCTGCCTTTTTATGGCTCTCAAGACCACTTGGAGTTCCAGCATGAGGTGGAGGTTTCGTGTAGGGTGAGGCATCCAAATCTCATGACCCTCATTGGAACATGTCCAGAATCTAGGTCACTTATTTATGAGTACCTCCAAAATGGAAGCCTTGAAGACCGGCTCACCTGCAGGAACAGAACTCCCCCTCTTCCATGGCAAACTCGAATACGCATTGCCACAGAGATATGTTCTGCCCTTATCTTCCTTCACTCCAACAAGCCTTCAATCATCCATGGAAATCTGAAGCCTACCAAGGTGCTCCTTGATGGAAATTATGTTTGCAAGCTCGGTGACTTGGACATCTTGCGCATAATCCCTCCAGGTGAAAATATGACTAAAACCAGCCCAAAGAGTACCTCTGCTTATATGGACCCAGAATTTCTTGAGACTGGAGAACTTGCTCCAGAGTTGGATGTATACTCATTTGGAATTATAATGATGCGGCTTTTAACTGGGAGACCAGCGTTGGGAATAGTGAACGATGTCAAATGTGCACTAGAGAATGAAGTTTTTAATGCAGTTTTAGACTTTTCAGCTGGGGACTGGCCACTTGAGCAAGCAAATCAGCTGGCTCACTTGGCATTGAGATGCTGCGAGAAAAATCACTTCAATCGGCCTGATCTTGCATCCGAAGTATGGAGTGTTCTTGAGGCAATGATGGTTTCATGTACCGCCTCAGCAACATGCTTGGGATCCCGACCCCATCGCCGAATTCCTTCTCATTTCATTTGTCCCATTTTCCAGGAAGTCATGAAAGATCCACATATAGCAGCAGATGGGTTCACATATGAGGCAGATGCAATCAAAGGATGGCTGCAAAGTGGCCACAACACTTCACCAATGACCAATCTTAAGCTATCAGACTGCAATTTACTGCCCAATTATGCCCTACTTTATGCTATTCAGGAGTGGCAGCAACGATCATGA 2523 42.96 MESCAEIENGPVGDVENTIFVAVGKRVEKSKTALFWAVKNFSGKRVCVLHVHQPENTYASVNKKVSANKLKQQAVKASYERERQNMMKLLNQYLLILAQKGVRAYKLWIEMENIEKGIVEIIAQKNIKWLVMGAAADKYYSKKMAELKSKKAIFVCQQAPLSCHIWFACKGYLIYTRGSRQVETEIEVSPPLLLLNKNVESKQSANLISESITYKQKSFDLSSLKSTGRMMLLQYHANTEENADEWDGMSRRSSSPRLSSSNWSNKGEVDSLHSTLCPKDEAQEEDSILPSVQKAHDGHHYSPSIIFLDEKNQGLATDGSYDRLEPAIMFTKNSKQDAFEESVKRWQAEDDAMEAIRKAKETETLHTKHMSKRKELEEELARGKEEVERMKNQQDELMKELQMVQDQRSILESRIAESHSSEKELEEKIISAVKLLISIRQKRDELLVEHKDAIREVNELRGSVQEEAASFCTPQFLSFSFMEINEATNNFDPSWKIGEGSYGSVYKGVLRHMHVAIKMLPFYGSQDHLEFQHEVEVSCRVRHPNLMTLIGTCPESRSLIYEYLQNGSLEDRLTCRNRTPPLPWQTRIRIATEICSALIFLHSNKPSIIHGNLKPTKVLLDGNYVCKLGDLDILRIIPPGENMTKTSPKSTSAYMDPEFLETGELAPELDVYSFGIIMMRLLTGRPALGIVNDVKCALENEVFNAVLDFSAGDWPLEQANQLAHLALRCCEKNHFNRPDLASEVWSVLEAMMVSCTASATCLGSRPHRRIPSHFICPIFQEVMKDPHIAADGFTYEADAIKGWLQSGHNTSPMTNLKLSDCNLLPNYALLYAIQEWQQRS* 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17636564 17646586 + Vvi16g716 Vvi16g716 778365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g716 840 Pfam Protein kinase domain 496 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g716 840 Pfam U-box domain 770 838 IPR003613 GO:0004842|GO:0016567
Vvi16g716 840 ProSiteProfiles Protein kinase domain profile. 491 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g716 840 PANTHER OS02G0152300 PROTEIN 13 839 - -
Vvi16g716 840 SUPERFAMILY RING/U-box 766 839 - -
Vvi16g716 840 SMART Ubox_2 773 836 IPR003613 GO:0004842|GO:0016567
Vvi16g716 840 CDD RING-Ubox_WDSUB1_like 774 815 - -
Vvi16g716 840 Coils Coil 359 414 - -
Vvi16g716 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 840 IPR013083 -
Vvi16g716 840 ProSiteProfiles U-box domain profile. 769 840 IPR003613 GO:0004842|GO:0016567
Vvi16g716 840 SUPERFAMILY Protein kinase-like (PK-like) 471 752 IPR011009 -
Vvi16g716 840 Gene3D HUPs 12 135 IPR014729 -
Vvi16g716 840 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 13 839 - -
Vvi16g716 840 Gene3D Transferase(Phosphotransferase) domain 1 564 762 - -
Vvi16g716 840 MobiDBLite consensus disorder prediction 243 272 - -
Vvi16g716 840 Gene3D Phosphorylase Kinase; domain 1 462 563 - -
Vvi16g716 840 Pfam Universal stress protein family 18 134 IPR006016 -
Vvi16g716 840 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 134 - -
Vvi16g716 840 MobiDBLite consensus disorder prediction 252 271 - -
Vvi16g716 840 CDD STK_N 18 171 - -
Vvi16g716 840 ProSitePatterns Protein kinases ATP-binding region signature. 497 518 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi15g857 Vvi16g716 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76277 PF07714 PK_Tyr_Ser-Thr 3.70E-35 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g716 - - vvi:100267999 1660.58