Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g787 ATGATGAGAATCAACGCCAAGACCCTTTCAAGGGACTCGTGGTCTTGGCGGAAGTATGGGCAGAAGCCAATCAAGGGATCCCCATATCCACGGAACTACTATCGCTGCAGCACCTTGAAGGCTTGCTCTGCTAGGAAACAAGTAGAGCTCAGTCAAGACAACCCCGAGGAGTACATCGTCAGCTACATAGGTGATCACATCCACGCCCGCCCCACCACCCGGAGATCCCTTGCCGGCACAGCCAGAAACCCTCCACCGGCCGCCCCCACCTCCGTCACAGATCTCTCACCAACCACACCATTGACTGCTCATTACAACAACAAAACCCAAAAGCCAGACACGGAGAATGAAAACGAAAACAGTGAGCCAATGTTTGAAGACGAAGAAGAAGAAGAAGAAGAAGCTGATATTCTCACAACAAACATGCAGATGTCAGAAGAAACATTCATGGCCATGCATGTACTAAACTCAAGAGATTCACAACCGACCATTGCCGAACCTCATTCTCCGGCCAAAAACTCCATTAACGCAGCCGGAAGCTCCGATTAG 549 50.46 MMRINAKTLSRDSWSWRKYGQKPIKGSPYPRNYYRCSTLKACSARKQVELSQDNPEEYIVSYIGDHIHARPTTRRSLAGTARNPPPAAPTSVTDLSPTTPLTAHYNNKTQKPDTENENENSEPMFEDEEEEEEEADILTTNMQMSEETFMAMHVLNSRDSQPTIAEPHSPAKNSINAAGSSD* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18360078 18360711 + Vvi16g787 Vvi16g787 778436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g787 182 MobiDBLite consensus disorder prediction 157 182 - -
Vvi16g787 182 MobiDBLite consensus disorder prediction 75 136 - -
Vvi16g787 182 ProSiteProfiles WRKY domain profile. 5 71 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g787 182 SUPERFAMILY WRKY DNA-binding domain 7 71 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi16g787 182 SMART WRKY_cls 10 70 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g787 182 Coils Coil 128 148 - -
Vvi16g787 182 Pfam WRKY DNA -binding domain 12 68 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g787 182 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 160 IPR044810 GO:0003700
Vvi16g787 182 MobiDBLite consensus disorder prediction 119 136 - -
Vvi16g787 182 MobiDBLite consensus disorder prediction 86 109 - -
Vvi16g787 182 Gene3D WRKY domain 1 72 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi16g787 182 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 160 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g45 Vvi16g787 ECH
Vvi15g833 Vvi16g787 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14158 PF03106 WRKY 3.50E-23 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g787 K13425 - vvi:104882213 342.428