Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g977 ATGGGGAAGATTGGTGGAGCTGGATCCTGGTTGACTGCAGTGAAGAGGGCCTTCAGGTCTCCAAGTAAGAGAGAAGAACATGAACAAGAGGAAGAAGAAAAGAAGCGGGGAAAACGAAGATGGATTTTTCGGAAACATTCCAACAACAACGAGACCGGCAAAAGGCATGCCATTGCAGTGGCAATGGCGACGGCAGCCGCCGCCGAGGCAGCAGTTGCGACGGCGAAAGCAGCGGTGGAGGTTGCTCGCCTCACTAGGCGGCCTTCCATCTTCGTTAGAGAACACTGTGCTGCCATTGTTATTCAGACCGCATTCAGAGGCTATCTGGCAAGGAAGGCTCTTCGGGCGCTCAAAGGGCTGGTGAAGCTGCAGGCTTTGGTGAGAGGCCACAACGTCCGGAAGCGAGCAAAGAAGACTCTTCGCTGCATGCAAGCTCTGGTTCGGGTCCAAGCCCGGGTCTGTGATCAGCGCAAGAGACTCTCGCTCTCACACGAGGAGAAAATCGACTCCATATTCAGCGATCCTAGCAGCTTATGGGAGTCAAATCTTCTCAATAGAAAATCCATGTCTGCTTGGGATTGGGATGATCACCCACACACCAAGAAACGTGAAGAAGAGGCCCTTGCTCATGCCTTCGCCCACCAGATATGGAGATCGTCCAGAAAGGACCAGTACCATGCTAGTGAAGGAGAGCTTGAAGACAAACCAAGACGGCTCGATCGGCGGATGGTGACAAAGCATTGGGAGAGTACAGGCAGAAGCTCATGTGACCAAAGAGAGCACATAAAAACAGTTGAAGTGGACACCTCTCAGCCTTACTCCTACTCAACCCCCATCTTCCAGAGACCATTCCATCAGCCCCCATCTCCTATCACGCCCTCTCCATATAAGATCAAGCTTTTCCAAGCTCATTCAGCCAGCCCTCGATGCCATTCAGCTGCTCAGACACCGAAACTAGGCTCAATTTACTACCATGGAATGTGGTCAAGTAGCAGCGCCGGGGCTGCTGCAATGCCAAATTACATGGCCTCTACTGAATCAGCCAAGGCTCGGGCCCGGTCCCAGAGTGCACCACGCCAGAGGGCTTCAACCCCAGAGAGGGATAGACCAGGGTCGGCCAGAAAACGCCTTTCTTTCCCTGATCCTGACCCGTTCGGAGCCACTGGCATTGAGGGCGAAACTTTTGGTAGTAACTTTGAGGGCTCGAATGTGTCTTCCTGTTGTGAGGAGAGCCATGGTGATGAGATCAACATTCAACCAGTCATCTTGGGAAGGGGCTGA 1281 53.01 MGKIGGAGSWLTAVKRAFRSPSKREEHEQEEEEKKRGKRRWIFRKHSNNNETGKRHAIAVAMATAAAAEAAVATAKAAVEVARLTRRPSIFVREHCAAIVIQTAFRGYLARKALRALKGLVKLQALVRGHNVRKRAKKTLRCMQALVRVQARVCDQRKRLSLSHEEKIDSIFSDPSSLWESNLLNRKSMSAWDWDDHPHTKKREEEALAHAFAHQIWRSSRKDQYHASEGELEDKPRRLDRRMVTKHWESTGRSSCDQREHIKTVEVDTSQPYSYSTPIFQRPFHQPPSPITPSPYKIKLFQAHSASPRCHSAAQTPKLGSIYYHGMWSSSSAGAAAMPNYMASTESAKARARSQSAPRQRASTPERDRPGSARKRLSFPDPDPFGATGIEGETFGSNFEGSNVSSCCEESHGDEINIQPVILGRG* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21341511 21343257 + Vvi16g977 Vvi16g977 778626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g977 426 Gene3D - 93 146 - -
Vvi16g977 426 MobiDBLite consensus disorder prediction 362 376 - -
Vvi16g977 426 ProSiteProfiles IQ motif profile. 94 122 IPR000048 GO:0005515
Vvi16g977 426 SMART iq_5 116 137 IPR000048 GO:0005515
Vvi16g977 426 SMART iq_5 93 115 IPR000048 GO:0005515
Vvi16g977 426 MobiDBLite consensus disorder prediction 347 361 - -
Vvi16g977 426 PANTHER PROTEIN IQ-DOMAIN 14-LIKE 1 52 - -
Vvi16g977 426 PANTHER PROTEIN IQ-DOMAIN 14-LIKE 54 415 - -
Vvi16g977 426 ProSiteProfiles IQ motif profile. 118 145 IPR000048 GO:0005515
Vvi16g977 426 MobiDBLite consensus disorder prediction 18 38 - -
Vvi16g977 426 Pfam IQ calmodulin-binding motif 121 137 IPR000048 GO:0005515
Vvi16g977 426 Pfam IQ calmodulin-binding motif 95 115 IPR000048 GO:0005515
Vvi16g977 426 MobiDBLite consensus disorder prediction 16 38 - -
Vvi16g977 426 MobiDBLite consensus disorder prediction 346 396 - -
Vvi16g977 426 Pfam Protein of unknown function (DUF4005) 311 392 IPR025064 -
Vvi16g977 426 PANTHER IQ-DOMAIN 5-RELATED 54 415 - -
Vvi16g977 426 PANTHER IQ-DOMAIN 5-RELATED 1 52 - -
Vvi16g977 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 140 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g250 Vvi16g977 ECH
Vvi15g624 Vvi16g977 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g977 - - vvi:100255609 758.444