Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g17 ATGTCCGCTATGGTTTCAGCTCTCACTCAAGTCATTGGAAACACTGACAAAAACCCACTTCATGATCTTGGAAACCCATCACCAATCTCCCACCACTCCGCCACAACCCCACATGATCAACCTTCTCAGCTTCTTCAAGATCAAGGGAACCAGCTGAGGAGAAGACACTATAGGGGAGTAAGGCAAAGACCTTGGGGGAAGTGGGCAGCTGAGATACGTGATCCAAATAAGGCAGCTCGAGTATGGCTGGGCACTTTCGACACTGCTGAGGATGCTGCACTTGCCTATGATGAAGCTGCTCTTAGGTTCAAAGGAAACAAAGCCAAGCTTAACTTCCCTGAAAGAGTTCAAGGCCGAAGCGAATTAGGTTACCTCACAAATCCTCCTTCCAGGTGGAGGTGGTGA 405 49.14 MSAMVSALTQVIGNTDKNPLHDLGNPSPISHHSATTPHDQPSQLLQDQGNQLRRRHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEDAALAYDEAALRFKGNKAKLNFPERVQGRSELGYLTNPPSRWRW* 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 108832 110748 - Vvi17g17 Vvi17g17 778714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g17 134 MobiDBLite consensus disorder prediction 14 51 - -
Vvi17g17 134 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 31 117 - -
Vvi17g17 134 MobiDBLite consensus disorder prediction 28 50 - -
Vvi17g17 134 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Vvi17g17 134 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Vvi17g17 134 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Vvi17g17 134 PANTHER DNA-BINDING DOMAIN 31 117 IPR044808 GO:0003700|GO:0009873
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi14g1088 Vvi17g17 ECH
Vvi1g1351 Vvi17g17 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14177 PF00847 AP2 3.50E-16 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g17 - - vvi:100245655 252.677