Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g461 ATGGAGAATAAATTAAGAAAATTATTTTTGGGATTTAGATCTATCATTCACCTCGCCTCCATCACGCTCAAATCACTCCACAGCAGGTTTCTTTTCTATATGGCAATGCAGGAAGCGACTCCTGCCCCTCTTCACTCTGCTGCATTTGTTGGGAATGCCTTTGTGGATCAGTATTATCCCATTCTTCACCAAAACCCGGAATTGCTGTATAAATTTTATCAGGATTCAAGTGTGCTAAGCAGGCCAGATTCGAGTGGTAGTATGACCACAGTAACAACTTTGCAGGCAATCAATGACAAGATCATGTCATTCCATTATGGCGAATATAAGATGGAGATAGAGACTGCAGATGCTCAAGACTCTTACAAGGAAGGGGTGACTGTTCTAGTGACTGGAAGTGTAACTCTGAAAGATAACGTGAAAAGGAAATTTGGTCAATCATTCTTTCTAGCTCCACAGGACAATGGCTACTTTGTCTTAAATGATATTTTTACGTATATCGAGGAAAAGAAATCATTGCAGGAAAATTTTGCACCAGTTGATGGTATCAATGAAACTGCTCCAACAGCTGCCTTGACTCCAGATCCAGAGGCCAATCATGTTCCTGATCATCTTGTGGTAGACCCTGCAACACCATCCTTTGAGGAGGAGGAGGATCTGAATAATGTTGCTGAAGTTTGTGACCCATCAGATAATGAAGAAGGATCGGTTATTGAAGAAGAGGCTGTTGTTGAACCCCCATCTATTTCAAGTGAGAATGAAATTTCTACAGTAGTCGATTCAGCTCCTGCAGCACAAGAGGATGCTCCAAAGAAATCTTATGCATCAATTGTGAAGGTAATGAAAGGCAGTGCAACATCCACTCCAGTCTTTGCTACCAGTACAGTAAGGGCAGCACCTGCAAACATTGATCAACAGTTGGCTGGTTCTGCAAAATCTGCTCCGGCACCAGAGGCATGGACTCCTACTAGTGACAGTGCTCCTGAAAGTAGCAATATTAATGAAGAAGGTTTCTCCATATATGTACGGCATTTGCCTTTAAGTGCAACAGTTCCACAATTGGAAGAGGAGTTCAAAAAATTTGGCCCTATTAAGCAAGATGGCATCCAAGTCAGAAGTAATAAGCAGGGATTCTGTTTCGGCTTTGTTGAGTTTGAATCTTTGAGTTCGATGCAGAGTGCACTTGAGGCATCACCTATCACAATTGGGGATCGTCAAGCTGTCGTCGAGGAAAAAAGAACTACCACTCGTGTTGGCGCTAGTGGTAGAGGCAGATACCCTCCAGGAAGGGGTGGGTTCCGGAATGACAACTTCAGGGGCCGTGGAAACTTTGGTGGTGGCCGGGGCTATGGGCGGAATGAGTCCAGAAATCAGGGTGAGTATTCAGGACGTGCAAGGGGTCCAACTGGACGCAATGGAGAGGCTTATCAGCGGGTTAATCAGAATGGAAGTGGGAAGACTGGGCGCCAAGGTGGGATGGCGTGGAACTCAGCTTCTTCTTGA 1503 44.64 MENKLRKLFLGFRSIIHLASITLKSLHSRFLFYMAMQEATPAPLHSAAFVGNAFVDQYYPILHQNPELLYKFYQDSSVLSRPDSSGSMTTVTTLQAINDKIMSFHYGEYKMEIETADAQDSYKEGVTVLVTGSVTLKDNVKRKFGQSFFLAPQDNGYFVLNDIFTYIEEKKSLQENFAPVDGINETAPTAALTPDPEANHVPDHLVVDPATPSFEEEEDLNNVAEVCDPSDNEEGSVIEEEAVVEPPSISSENEISTVVDSAPAAQEDAPKKSYASIVKVMKGSATSTPVFATSTVRAAPANIDQQLAGSAKSAPAPEAWTPTSDSAPESSNINEEGFSIYVRHLPLSATVPQLEEEFKKFGPIKQDGIQVRSNKQGFCFGFVEFESLSSMQSALEASPITIGDRQAVVEEKRTTTRVGASGRGRYPPGRGGFRNDNFRGRGNFGGGRGYGRNESRNQGEYSGRARGPTGRNGEAYQRVNQNGSGKTGRQGGMAWNSASS* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5737661 5753594 + Vvi17g461 Vvi17g461 779158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g461 500 MobiDBLite consensus disorder prediction 413 500 - -
Vvi17g461 500 Pfam Nuclear transport factor 2 (NTF2) domain 50 166 IPR002075 -
Vvi17g461 500 SMART rrm1_1 339 410 IPR000504 GO:0003723
Vvi17g461 500 MobiDBLite consensus disorder prediction 474 500 - -
Vvi17g461 500 Gene3D - 318 420 IPR012677 -
Vvi17g461 500 SUPERFAMILY RNA-binding domain, RBD 328 445 IPR035979 GO:0003676
Vvi17g461 500 MobiDBLite consensus disorder prediction 307 331 - -
Vvi17g461 500 CDD NTF2 46 168 IPR018222 -
Vvi17g461 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 340 398 IPR000504 GO:0003723
Vvi17g461 500 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 34 491 IPR039539 -
Vvi17g461 500 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 34 491 - -
Vvi17g461 500 MobiDBLite consensus disorder prediction 317 331 - -
Vvi17g461 500 Gene3D - 42 170 - -
Vvi17g461 500 ProSiteProfiles Nuclear transport factor 2 domain profile. 50 166 IPR018222 -
Vvi17g461 500 SUPERFAMILY NTF2-like 46 167 IPR032710 -
Vvi17g461 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 414 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g31 Vvi17g461 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g461 K24983 - vvi:100255231 853.588