Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g613 ATGGATTTCTCCTCCCCCAACCAGAAGCAAGGCCACGAACTGGTCGAATTCAAACACGTTTGCAAGTTCTGCAAGAAGAGCTTCCCCTGTGGGAGATCTTTGGGAGGCCATATGAGGTCTCATATGATCAACAGCTCTTTTGAAACTGATGAAAAGCTCAGCAAAACCAAGCTCTCATCTCTCCACAAAGCTGCAACCAATCCTGATTCATGGACTAGTGCTAATCAGAAGTTGGTCATGGATAGCCAGTCCGATACTGAAACTGCAGTCCCCAATCGCAAAAAGAGATCAAGGAGAAGAACAAGGTACATGGCCACTGCAACCTCCTCTTCTTTTTCTTTTGCTAATGCTTCTTCCTCTGTTTCTGAGATTGAGCAAGAACAAGAAGAGGTTGCTATAAGTTTGATGATGCTTTCAAGGGATTCTGGTAACTGGGGTGGTTTGAATTCTGTTGTGAAGCTGAAGAAGCTCATAAAAGATGAGAAGTTCAATCCTTCTGCTTTGGATTCGGAGGATTTCCAGTTTTACTGCAAACAATCCGAATTCGGGGCTTCTGGGAATTCAAGAAATGATTCCAAGTTGAACAAATCTGAAGTTCTGGAGACTAATAAAAGCAACAAGCTTAAGGTGAACTGCTCAAAGAAAACGACTAATAATGATGAGCTAGCCACAAAAAGATCAAAGCTCACTAAGCCCTGCAACAACCATAGCCCCAGCCGCAGCCCTGGCCCCATCCATGGCCACACTGCCAGTGCCTCTGCTGTGAAGGCTGAGACAATTTTGGGATCAAAGAAGAGTAAGGGCCATGAGTGCCCAATTTGCCTCAAGGTTTTCTCATCAGGCCAGGCATTGGGTGGTCACAAGAGATCACATTTGGTTGGTGGGTCAGATACCAGAGGCAGCCAAACCATTGTTATTCCCAAGCCCCTTCCAGAGATCAGAGACCTTCTTGATCTTAACCTTCCTGCTCCTGCAGAGGAAGAGGGCGGGTTCAAGGCATGGTGGGTTGGAAGCAGCCACAAGCATGAGCCACTGGTGGGCATGATATCAAACTGA 1056 46.4 MDFSSPNQKQGHELVEFKHVCKFCKKSFPCGRSLGGHMRSHMINSSFETDEKLSKTKLSSLHKAATNPDSWTSANQKLVMDSQSDTETAVPNRKKRSRRRTRYMATATSSSFSFANASSSVSEIEQEQEEVAISLMMLSRDSGNWGGLNSVVKLKKLIKDEKFNPSALDSEDFQFYCKQSEFGASGNSRNDSKLNKSEVLETNKSNKLKVNCSKKTTNNDELATKRSKLTKPCNNHSPSRSPGPIHGHTASASAVKAETILGSKKSKGHECPICLKVFSSGQALGGHKRSHLVGGSDTRGSQTIVIPKPLPEIRDLLDLNLPAPAEEEGGFKAWWVGSSHKHEPLVGMISN* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7475228 7477459 + Vvi17g613 Vvi17g613 779310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g613 351 Pfam C2H2-type zinc finger 269 291 - -
Vvi17g613 351 Pfam C2H2-type zinc finger 19 42 - -
Vvi17g613 351 SUPERFAMILY beta-beta-alpha zinc fingers 19 291 IPR036236 -
Vvi17g613 351 MobiDBLite consensus disorder prediction 217 249 - -
Vvi17g613 351 MobiDBLite consensus disorder prediction 228 246 - -
Vvi17g613 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 41 IPR013087 -
Vvi17g613 351 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 177 351 - -
Vvi17g613 351 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 66 228 - -
Vvi17g613 351 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 16 61 - -
Vvi17g613 351 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Vvi17g613 351 SMART c2h2final6 269 291 IPR013087 -
Vvi17g613 351 SMART c2h2final6 19 41 IPR013087 -
Vvi17g613 351 ProSitePatterns Zinc finger C2H2 type domain signature. 271 291 IPR013087 -
Vvi17g613 351 MobiDBLite consensus disorder prediction 80 100 - -
Vvi17g613 351 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 177 351 - -
Vvi17g613 351 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 66 228 - -
Vvi17g613 351 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 16 61 - -
Vvi17g613 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 291 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g59 Vvi17g613 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14219 PF13912 zf-C2H2_6 1.20E-06 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g613 - - vvi:100241686 263.462