Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g626 ATGGTGAAGATCTGTTGCATTGGAGCTGGATATCAGTGCAGAGGAAGGAACCTGTTTTTTAGCACCAATGTGGAAAAACATATCTCTGAGGCAGACATAATCTTTGTTTCTGTCAACACCCCAACAAAAACTCGGGGCCTTGGAGCTGGGAAAGCTGCAGATTTGACATACTGGGAGAGTGCAGCCCGAATGATTGCTGATGTCAAGGGCATCAGCTATCAAATTCTCTCGAACCCAGAATTCCTTGCTGAGGAGCTCTCAAAGTTAGCTGCCAACGCCTTCTTGGCTCAGAGGATTTCATCTGTTAATGCCATGTCAGCTCTCTGCGAGGCAACTGGTGCTGATGTTTCTGAGGTTTCCCATGCTATTGGTAAGGATTCAAGAATCGGGCCTAAGTTTCTCAATGCCAGTGTTGGTTTTGGTGGATCCTGTTTTCAGAAGGACATCCTGAACTTGATCTATATTTGTGAGTGCAATGGCCTCCCTGAGGTTGCAAACTACTGGAAACAAGTCATTAAGGTGAATGACTACCAAAAGAACAGATTCGTGAACCGGGTTGTCGCCTCCATGTTTAACACCGTCTCAGGTAAGAAGATTGCCATACTTGGTTTTGCTTTCAAGAAGGATACAGGTGACACAAGAGAAACTCCTGCAATAGACGTTTGCAAGGGACTGTTGGGGGATAAGGCAAGTTTGAGCATATATGATCCACAGGTCACAGGAGATCAGATCCAGAGGGAAATCTCAATGAACAAGTTTGATTGGGACCATCCAGCAACAAGGGATGCCCATGGGATCTGCATTCTTACTGAGTGGGATGAATTCAAGACTCTTGACTACCAGAGGATCTTCAATAACATGCAGAAGCCTGCCTTTGTGTTTGATGGCCGCAACATAGTGAACATTGAGAAGCTGAGGGAGATTGGATTTATCGTGTACTCAATTGGAAAGCCATTAGATCCATGGCTCAAGGACATGCCTGCTATCGCATAA 993 45.42 MVKICCIGAGYQCRGRNLFFSTNVEKHISEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVKGISYQILSNPEFLAEELSKLAANAFLAQRISSVNAMSALCEATGADVSEVSHAIGKDSRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEVANYWKQVIKVNDYQKNRFVNRVVASMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKASLSIYDPQVTGDQIQREISMNKFDWDHPATRDAHGICILTEWDEFKTLDYQRIFNNMQKPAFVFDGRNIVNIEKLREIGFIVYSIGKPLDPWLKDMPAIA* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7659525 7662326 - Vvi17g626 Vvi17g626 779323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g626 330 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 85 176 IPR014026 GO:0016616|GO:0051287
Vvi17g626 330 Gene3D - 11 75 - -
Vvi17g626 330 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 186 313 IPR036220 -
Vvi17g626 330 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 14 68 IPR001732 GO:0016616|GO:0051287
Vvi17g626 330 Gene3D - 113 326 - -
Vvi17g626 330 SMART UDPG_MGDP_dh_C_a_2_a 200 302 IPR014027 GO:0016616|GO:0051287
Vvi17g626 330 Gene3D - 84 112 - -
Vvi17g626 330 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 84 330 - -
Vvi17g626 330 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 12 68 - -
Vvi17g626 330 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 200 301 IPR014027 GO:0016616|GO:0051287
Vvi17g626 330 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 85 181 IPR008927 -
Vvi17g626 330 PIRSF UDPglc_DH_bac 82 319 IPR028357 GO:0000271|GO:0003979
Vvi17g626 330 PIRSF UDPglc_DH_bac 10 76 IPR028357 GO:0000271|GO:0003979
Vvi17g626 330 PIRSF UDPglc_DH_bac 66 85 IPR028357 GO:0000271|GO:0003979
Vvi17g626 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 86 IPR036291 -
Vvi17g626 330 PIRSF UDPglc_GDPman_dh 9 77 IPR017476 GO:0016616
Vvi17g626 330 PIRSF UDPglc_GDPman_dh 74 317 IPR017476 GO:0016616
Vvi17g626 330 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 12 68 IPR028356 GO:0003979
Vvi17g626 330 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 84 330 IPR028356 GO:0003979
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g58 Vvi17g626 ECH
Vvi14g1620 Vvi17g626 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g626 K00012 - vvi:100250128 594.734