Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g672 ATGTCTCGCTGCTGTTCTCAGTGTGGTCATAATGGTCATAATTCTCGCACATGGATCATGCTGTTTGGAGTGAGAGTCACTGTGGATTCGATGCGTAAGAGCGTCAGTTTGAACAATCTGTCGCAGTATGAGCAGCCTCACGAGTCTTCCAACGCCGATGCCACCCCCGCCGCTGGATACGTTTCCGCCGACGATGTGGCTCACCACTCCTCAGGGAATCGCGAGCGCAAGCGAGGTGTCCCATGGACAGAAGAAGAACACAAGCTTTTCCTGGTTGGATTGCAGAAAGTTGGAAAAGGAGACTGGCGAGGAATCTCCAGGAATTTCGTGAAAACTCGAACTCCAACACAGGTCGCAAGTCATGCTCAGAAGTACTTTCTCCGCAGAAACAATCTCAATCGACGACGCCGCAGATCTAGCCTCTTCGACATCACCACCGAATCGGTCACGGCAGTTCCCATGGAAGAAGAGCAAGTACTTCATCATCAAGAGAACACATCTCAATCGCAGCAGTCTCCTAAGACTTTTTCCGAGACCGGCAGTGGCGGACAAAATGATGTTAATACAAGGCTGGTCCGTCCGATTCCCGTTCTTCCTATTCCTCCCGAGTCAACGGATCTCAACTTGAATCTGAAGTCCTCAGTTGATCCATCCCCCTTGTCACTGAAGCTCTCCCTCTCATCCAATCAGAATCATCCAAATCAACCATCTAGGCACTCCGCTTTTCAGGCTATGTCAAGCTTCAACAACGGTGATAGCATCATAAGCGTTGCTTGA 777 50.06 MSRCCSQCGHNGHNSRTWIMLFGVRVTVDSMRKSVSLNNLSQYEQPHESSNADATPAAGYVSADDVAHHSSGNRERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNLNRRRRRSSLFDITTESVTAVPMEEEQVLHHQENTSQSQQSPKTFSETGSGGQNDVNTRLVRPIPVLPIPPESTDLNLNLKSSVDPSPLSLKLSLSSNQNHPNQPSRHSAFQAMSSFNNGDSIISVA* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8454311 8456118 + Vvi17g672 Vvi17g672 779369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g672 258 MobiDBLite consensus disorder prediction 163 188 - -
Vvi17g672 258 SUPERFAMILY Homeodomain-like 76 131 IPR009057 -
Vvi17g672 258 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Vvi17g672 258 PANTHER KIN2 180 258 - -
Vvi17g672 258 PANTHER KIN2 12 175 - -
Vvi17g672 258 MobiDBLite consensus disorder prediction 158 188 - -
Vvi17g672 258 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 77 128 IPR006447 GO:0003677
Vvi17g672 258 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Vvi17g672 258 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 12 175 - -
Vvi17g672 258 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 180 258 - -
Vvi17g672 258 SMART sant 78 128 IPR001005 -
Vvi17g672 258 Gene3D - 80 132 - -
Vvi17g672 258 CDD SANT 81 126 IPR001005 -
Vvi17g672 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
Vvi17g672 258 ProSiteProfiles SANT domain profile. 77 130 IPR017884 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g806 Vvi17g672 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14223 PF00249 Myb_DNA-binding 1.10E-11 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g672 - - vvi:100265707 445.277