Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g778 ATGAGGGTTGTTTTTCTCTTCTTAATGGCTTCAGGCTTTGTTAGTAATTTAATGGCTGACCCAAGAACAACTGTGGCTGGATTTCAATGCAATTCAACAGAAGCTGTTTCGTCTGTTCTTCTTGCACAAAATTTTGTTCCTGCAATGGCTAATCTGAGCACTCAGGTTAATGAAGATGGGTTTGGAACTTCTATTGTGGGTGAGGCCCCAAATGCTGTTTTTGGACTTGCTCAGTGCTTCAAAGACCTTAGCTCCATTGACTGTCAACTCTGCTTCTCTGAAATTCGGTCTATTCTCCCAAAGTGCTATCCAGATACAGGTGGAAGGATATTCTTTGATGGGTGTTTTGGCCGATATGAGAATTTCTCGTTCTTCGATCAAGGTATGGATTCAGTACAGTTAAAAAACTGTTCTTCTAGCAAGAACAGTTCTCAGCCTGGTATATTTAAAGAAGCTTTAGAAAGGGTCATTGAAAGTGTGAGCTTAAAGGCTCAGAAGAATCAGGGTTTTGCGGTGGCATCCCATTCGGTCTCCAATTTGACATTACATGCTCTTGCACAATGTTGGGAGAGCTTAGATAAGAAGACCTGTAATTCGTGCCTCCAAGCTTCTGCTTCATCAATCATGTCATGTTATCCAGGTGTTGACGGCCGGTCTCTCAATGCAGGCTGTTATATGAGATATTCAAATGAGGTTTTCTGGAATTTGAGCCGGCACACTGGACTTTCTGCAGGGAGAAAGGCCCTCTATATCATATTAGGTTTGGCTGTTGGTGGATTTCTAATCTTAGCTGGAATAGGCTTGTGGAAAAAGGGGCACCTAAGACAGTCATTTGGCAAATCTTTGAAAGATATATATGGATCGGGATTATCTTCTGCTCTTGCTCACTCCCAGCTAAACTTTAGATACCAGGAATTGAGACAAGCAACTAACAATTTTGATTCATCAAACAAGCTTGGACAGGGTAGTTATGGGAGTGTCTACAAGGGAATTCTTTTGGATGGAAGAGAAGTTGCAGTGAAACGGTTGTTTCTGAATACAAGACAGTGGATTGATCAGTTCTTCAATGAGGTGCATCTGATCAACCAGGTACGCCACAAAAATCTGGTGAAGTTGCTAGGTTACAGTGTGGATGGCCAAGAGAGCTTGCTTGTTTACGACTACTACCCCAACAAGAGCTTAGATCATTTTATATTTGATGAAAATCAAGCCCAGATTTTAGACTGGAAAAAGAGGATCGATATCATTCAAGGGGTGGCAGAAGGTCTTTCTTACCTCCATGAGGAGTCTGAAATCCGAATAATCCATAGAGACATAAAAGCAAGTAATATTCTCTTGGATGACAAACTGAAGCCCAAGATAACTGACTTTGGCCTTGCAAGATCTTTCGCAGAGGACCAAACTCATCTTAGCACTGGAATAGCTGGTACCCTAGGTTATATGGCTCCTGAGTATGTTGTCCATGGGCATCTGACAGAGAAAGCTGATGTATACAGCTTTGGAGTACTTCTACTTGAAATTCTGACTGGGCAGAGGTGCAGCAATGGCACTGGAGCAAAACCCGGGCAATTTTTCTTAGCTAAGATATGGAGTCATTACAAGGCTGAAACAGTTGATGAAATAATGGACAGACATTTCTATGACGAAGAAGTGAAAGATGAGATTTTGCATGCCGTTCATGTGGGATTATTGTGCACACAAGCTACACCAAGTTACCGCCCCACAATGGCAAAAGTAGTGGAATTGCTGAGAAGCACCAAGAATCAAGAAAATGTTTTTCCAACAGATCCACCATTTTTAGATGTTTTATCAGTGGAAAACCTGGAAGAAGGTGACGGTATTCATTTGCTATCTGGGGCCTCTGCTCCTGGCTTTTCAGGATCCACGGGAAGTGTACTATATGGAAGATAA 1911 42.02 MRVVFLFLMASGFVSNLMADPRTTVAGFQCNSTEAVSSVLLAQNFVPAMANLSTQVNEDGFGTSIVGEAPNAVFGLAQCFKDLSSIDCQLCFSEIRSILPKCYPDTGGRIFFDGCFGRYENFSFFDQGMDSVQLKNCSSSKNSSQPGIFKEALERVIESVSLKAQKNQGFAVASHSVSNLTLHALAQCWESLDKKTCNSCLQASASSIMSCYPGVDGRSLNAGCYMRYSNEVFWNLSRHTGLSAGRKALYIILGLAVGGFLILAGIGLWKKGHLRQSFGKSLKDIYGSGLSSALAHSQLNFRYQELRQATNNFDSSNKLGQGSYGSVYKGILLDGREVAVKRLFLNTRQWIDQFFNEVHLINQVRHKNLVKLLGYSVDGQESLLVYDYYPNKSLDHFIFDENQAQILDWKKRIDIIQGVAEGLSYLHEESEIRIIHRDIKASNILLDDKLKPKITDFGLARSFAEDQTHLSTGIAGTLGYMAPEYVVHGHLTEKADVYSFGVLLLEILTGQRCSNGTGAKPGQFFLAKIWSHYKAETVDEIMDRHFYDEEVKDEILHAVHVGLLCTQATPSYRPTMAKVVELLRSTKNQENVFPTDPPFLDVLSVENLEEGDGIHLLSGASAPGFSGSTGSVLYGR* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10170748 10178460 - Vvi17g778 Vvi17g778 779475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g778 636 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Vvi17g778 636 CDD STKc_IRAK 319 583 - -
Vvi17g778 636 SUPERFAMILY Protein kinase-like (PK-like) 299 599 IPR011009 -
Vvi17g778 636 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 6 606 - -
Vvi17g778 636 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 6 606 - -
Vvi17g778 636 Gene3D Transferase(Phosphotransferase) domain 1 389 596 - -
Vvi17g778 636 Pfam Salt stress response/antifungal 137 230 IPR002902 -
Vvi17g778 636 Pfam Salt stress response/antifungal 45 121 IPR002902 -
Vvi17g778 636 Pfam Protein kinase domain 315 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g778 636 ProSiteProfiles Protein kinase domain profile. 313 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g778 636 SMART serkin_6 313 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g778 636 Gene3D Phosphorylase Kinase; domain 1 283 388 - -
Vvi17g778 636 ProSiteProfiles Gnk2-homologous domain profile. 23 124 IPR002902 -
Vvi17g778 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Vvi17g778 636 Gene3D - 130 233 IPR038408 -
Vvi17g778 636 Gene3D - 23 124 IPR038408 -
Vvi17g778 636 ProSiteProfiles Gnk2-homologous domain profile. 131 233 IPR002902 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g651 Vvi17g778 ECH
Vvi1g650 Vvi17g778 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76330 PF00069 Pkinase 2.30E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g778 - - vvi:100246742 1278.46