Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1007 ATGCAATCTGTTGGTCTACAGTTAAAAAATGCTACAGGTGCTCCAACTGGCAATTTTGTTACCGGAAATCCTCAGATAGTGCCAAGGACACAGCTAGGCATTCTAGATGCTGAACAGAATTTCCTGCCTCAGCGATTATCTCTCAGCCTCAGCACACAGATACCATCCACAGTTCCACTGGCTTCATTTCAGTACCAGTATGTGAACCCAGGTCTCTCATCACGTTTTGGTTCTTATGTTTCATCTTCAGCGGAGAGAACAATATCTTGTGAAGGTGATGAAAGTTCTCAAGCTAAGGAGTTTAGAAATGATGAATACCTACCATCTAGTTTCCCAGGAACTGATCAGAGTTCTGTCAAAACAGAGGCCTTGTGCAATCCTCGATACTCAGAAATCCCTAAAGTAACTGGTGCTGATCAGTGTCTCTATGAATCTTTTGGTCCTGCAAACACTGTCTTGAACTCCAAATTCCTCAAGTCAGTACAGCAATTGCTTGACGAAGTAGTTAATGTCCGAAAAACTTTGAAGCAGCAGGAGTTTGACAAACACCATAAGTTCCATGGGATTGACCCTAATGGGTTGGTTACCAATTCCTCCTGTAAGCTTTCATCCACAGAACGGCAGGATTTGGAGCACAAGAAAGCCAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAAACAGTATTATGATCAGACACAAATTGTGGGATCCTTTTTTGACATGTTAGCTGGGTTTGGGGCGGCAAAAACATACATGGCACTTGCCCTGCAAAGAATTTCCTGCCACTTCCGCTGTTTGCGTGATGCAATCAGTGGCCAGATTCGAATAACCTGCAGAAACCTTGGGGAGCAAGATACTTCACCAAATGGTCTAGGTGGTGGAATGTCTCGTCTTGGCTATGTAGACCAGCAGCTCAGACAACAGAGAGCTCTTCAGCAGTTTGGTGGGATGCGACATGCGTGGAGGCCACAGAGGGGACTGCCTGAAAGTTCTGTTTCAATCCTTCGCACATGGCTGTTTGAGCACTTTCTTCACCCTTATCCAAAGGATTCAGAGAAAATCATGCTAGCTAGGCAGACCGGCTTGACCAGGAGCCAGGTTGCAAACTGGTTTATAAATGCACGGGTGCGTCTTTGGAAGCCCATGGTTGAGGAGATTTATAAAGAAGAGATTGGTGATTCAGAGACAAAGTCTAAATCTTCCCCGGAGAGTCCTCCAAAAGAACCAAGAGATGATTCCTGGGCATCTGAGGATAAGGGAGAAGAGTTGCAAGAAACTATGACATCCACAGCTGCTGCAGGTGGCCACCTGGGTCAATCACATAACATGACTCTTATGGCTGCTACATACCACATATCAGAGTTGAGTGACCTAGGAGTTGGCAGTCAGGTGTCACTTGCATTGGGGTTGCGGCATTGTGAAAGCGATGTGCCATCCATTTCTGGGGGGCCCCTTATTAGAGGGGGTGATATTGCTGCTTCTGTGGGCCCTGACACTGCCGAATATAATTGCATGGATTCAGGAAACCAGCGACATAGGTTTGGCAAACCCCATCTCATACATGATTTTGTAGTCTGA 1587 45.75 MQSVGLQLKNATGAPTGNFVTGNPQIVPRTQLGILDAEQNFLPQRLSLSLSTQIPSTVPLASFQYQYVNPGLSSRFGSYVSSSAERTISCEGDESSQAKEFRNDEYLPSSFPGTDQSSVKTEALCNPRYSEIPKVTGADQCLYESFGPANTVLNSKFLKSVQQLLDEVVNVRKTLKQQEFDKHHKFHGIDPNGLVTNSSCKLSSTERQDLEHKKAKLLSMLDEVDKRYKQYYDQTQIVGSFFDMLAGFGAAKTYMALALQRISCHFRCLRDAISGQIRITCRNLGEQDTSPNGLGGGMSRLGYVDQQLRQQRALQQFGGMRHAWRPQRGLPESSVSILRTWLFEHFLHPYPKDSEKIMLARQTGLTRSQVANWFINARVRLWKPMVEEIYKEEIGDSETKSKSSPESPPKEPRDDSWASEDKGEELQETMTSTAAAGGHLGQSHNMTLMAATYHISELSDLGVGSQVSLALGLRHCESDVPSISGGPLIRGGDIAASVGPDTAEYNCMDSGNQRHRFGKPHLIHDFVV* 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11201409 11205044 - Vvi18g1007 Vvi18g1007 780710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1007 528 MobiDBLite consensus disorder prediction 394 425 - -
Vvi18g1007 528 SUPERFAMILY Homeodomain-like 325 390 IPR009057 -
Vvi18g1007 528 Coils Coil 158 178 - -
Vvi18g1007 528 ProSiteProfiles 'Homeobox' domain profile. 321 384 IPR001356 GO:0003677
Vvi18g1007 528 SMART prehox3 146 275 IPR006563 -
Vvi18g1007 528 Coils Coil 207 227 - -
Vvi18g1007 528 Pfam Homeobox KN domain 341 380 IPR008422 GO:0003677|GO:0006355
Vvi18g1007 528 SMART HOX_1 324 388 IPR001356 GO:0003677
Vvi18g1007 528 Gene3D - 321 399 - -
Vvi18g1007 528 Pfam Associated with HOX 152 274 IPR006563 -
Vvi18g1007 528 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 22 479 - -
Vvi18g1007 528 CDD homeodomain 324 385 IPR001356 GO:0003677
Vvi18g1007 528 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 479 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g4 Vvi18g1007 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14256 PF07526 POX 7.30E-42 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1007 - - vvi:100257488 874.774