Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1600 ATGGCCAAACACCCGCTTTCCTTCCTCCATTTCTTGCTTTGCTGCTGCTTTTTCTCTACCCTTTTATCACCTTCCCTATCCTCAGTCGAAGTTGAAGCCCTCCTTCAGTTCAAGAAACAGCTGAAAGACCCCTTACATCGTTTGGACTCCTGGAAAGATTCAGATTCTCCTTGTAAATTTTTCGGGGTCTCATGTGATCCAATCACTGGACTAGTAAACGAACTCTCACTCGACAATAAGTCTCTGTCGGGTGAGATCTCTTCGTCGCTATCTGCACTCCGAAGCCTCACACATCTTGTACTTCCTTCAAATTCGCTTTCTGGATATCTACCTTCGGAATTAAACAAATGCAGCAATCTTCAGGTGTTGAATGTGACTTGCAATAATTTAATCGGAACAGTTCCCGATCTTTCAGAGTTGAGCAACTTACGGACTCTGGATTTGTCGATAAACTACTTTTCTGGTCCATTCCCGTCTTGGGTGACAAATTTGACTGGTTTGGTTTCTCTGTCCCTTGGGGAAAACCATTATGATGAGGGTGAAATTCCTGAGAGTATTGGAAATTTGAAGAATTTGAGTTATATCTTTTTTGCACATTCCCAGTTGAGGGGTGAGATTCCAGAATCGTTTTTTGAAATTACAGCAATGGAATCGTTGGATTTTTCTGGCAACAACATCTCAGGGAACTTCCCCAAGTCCATTGCCAAGTTACAGAAACTTTACAAGATTGAGCTCTTTGATAACCAGCTCACTGGAGAGATCCCACCAGAGCTTGCAAACCTCACCCTTTTGCAGGAAATTGATATTTCTGAGAACCAGTTGTATGGAAAATTGCCTGAAGAGATTGGTCGGCTGAAGAAGTTGGTGGTTTTTGAATCATATGACAACAACTTCTCCGGAGAAATCCCTGCAGCGTTTGGGGACTTGAGTAATCTCACAGGGTTTTCCATCTATAGGAACAATTTTTCAGGAGAATTTCCAGCAAATTTTGGCCGATTCTCTCCGCTGAACAGTTTTGACATATCTGAGAATCAGTTTTCGGGTGCTTTCCCAAAGTACTTGTGTGAAAATGGGAGATTGCTGTACTTGCTTGCTCTGGGAAACCGATTTTCTGGGGAGTTCCCAGATTCTTATGCCAAGTGTAAATCTCTCCAGAGGTTGAGGATAAATGAGAATCAGCTCTCCGGGGAAATCCCAAATGGGATATGGGCACTGCCTAATGTACAAATGATTGATTTTGGTGATAATGGGTTCAGTGGAAGAATATCTCCAGACATTGGGACTGCCAGCAGCTTGAATCAGTTAATTTTGGCGAATAATAGGTTTTCGGGTAAGCTTCCATCTGAACTTGGCAGCCTTGCAAACTTAGGGAAGCTCTATTTGAATGGCAATGAGTTCTCTGGAAAAATTCCTTCTGAATTAGGTGCTTTAAAGCAGTTATCGTCTTTGCATCTTGAAGAAAATTCGCTCACAGGATCAATCCCGGCAGAACTGGGCAAATGTGCTAGGCTGGTGGACTTGAATCTTGCTTGGAATTCTCTCAGCGGTAATATCCCTGACTCATTTTCACTGCTGACCTACTTGAACTCTCTGAATCTCTCTGGGAATAAGCTTACAGGTTCACTTCCAGTCAATTTGCGAAAATTGAAGCTAAGTTCTATAGATTTGTCTAGGAACCAGCTATCTGGAATGGTTTCATCGGATCTTTTGCAAATGGGTGGAGACCAAGCGTTTCTTGGGAACAAGGGGCTCTGTGTTGAGCAAAAAAAGCTGTTTTTGTTTTGCATCATCGCCTCGGCCTTGGTTATTCTTTTAGTTGGATTACTGGTTGTGAGTTACCGGAACTTCAAGCACAATGAGTCTTACGCAGAAAATGAATTGGAAGGTGGGAAGGAGAAAGATCTAAAATGGAAACTCGAGTCTTTCCACCCAGTGAACTTCACTGCAGAGGACGTATGTAACCTGGAAGAGGACAATCTGATTGGAAGTGGAGGCACAGGCAAAGTTTACCGTTTAGATTTGAAGAGAAATGGTGGCCCTGTGGCCGTGAAGCAACTATGGAAGGGAAGTGGAGTGAAGGTTTTCACAGCAGAAATTGAGATTTTGAGGAAGATCAGGCACAGGAATATCATGAAGCTTTATGCCTGCCTCAAGAAAGGAGGGTCGAGTTTTCTGGTGTTGGAGTACATGTCCAATGGTAACCTCTTTCAGGCCCTTCACAGGCAGATTAAGGAAGGGATTGCTGACAATTCTTCTACTGAATCTTATTCTAGCTGTTTTGCAGGGACTCATGGATACATTGCACCTGAGCTGGCATATACTCTGAAAGTCACTGAAAAGAGTGATATATATAGTTTTGGCGTGGTTCTGTTAGAATTAGTTACTGGTCGAAGACCGATTGAAGAGGAGTATGGAGAAGGAAAGGATATTGTTTATTGGGTTGGGACTCATCTCAGTGACCAGGAAAATGTGCAAAAACTTCTTGACCGTGACATCGTATCTGATCTCGTCCAAGAGGACATGCTTAAGGTCTTGAAGGTCGCTATCCTTTGCACCAACAAGCTTCCAACTCCACGCCCTACTATGAGAGACGTTGTGAAGATGATCATTGACGCTGATTCTTGCACGCTCAAGTCTCCCGAAAGCAATCCAGAAAAAAATGTAAAGCCTCTTCTCTAG 2679 43.11 MAKHPLSFLHFLLCCCFFSTLLSPSLSSVEVEALLQFKKQLKDPLHRLDSWKDSDSPCKFFGVSCDPITGLVNELSLDNKSLSGEISSSLSALRSLTHLVLPSNSLSGYLPSELNKCSNLQVLNVTCNNLIGTVPDLSELSNLRTLDLSINYFSGPFPSWVTNLTGLVSLSLGENHYDEGEIPESIGNLKNLSYIFFAHSQLRGEIPESFFEITAMESLDFSGNNISGNFPKSIAKLQKLYKIELFDNQLTGEIPPELANLTLLQEIDISENQLYGKLPEEIGRLKKLVVFESYDNNFSGEIPAAFGDLSNLTGFSIYRNNFSGEFPANFGRFSPLNSFDISENQFSGAFPKYLCENGRLLYLLALGNRFSGEFPDSYAKCKSLQRLRINENQLSGEIPNGIWALPNVQMIDFGDNGFSGRISPDIGTASSLNQLILANNRFSGKLPSELGSLANLGKLYLNGNEFSGKIPSELGALKQLSSLHLEENSLTGSIPAELGKCARLVDLNLAWNSLSGNIPDSFSLLTYLNSLNLSGNKLTGSLPVNLRKLKLSSIDLSRNQLSGMVSSDLLQMGGDQAFLGNKGLCVEQKKLFLFCIIASALVILLVGLLVVSYRNFKHNESYAENELEGGKEKDLKWKLESFHPVNFTAEDVCNLEEDNLIGSGGTGKVYRLDLKRNGGPVAVKQLWKGSGVKVFTAEIEILRKIRHRNIMKLYACLKKGGSSFLVLEYMSNGNLFQALHRQIKEGIADNSSTESYSSCFAGTHGYIAPELAYTLKVTEKSDIYSFGVVLLELVTGRRPIEEEYGEGKDIVYWVGTHLSDQENVQKLLDRDIVSDLVQEDMLKVLKVAILCTNKLPTPRPTMRDVVKMIIDADSCTLKSPESNPEKNVKPLL* 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 26025914 26031969 - Vvi18g1600 Vvi18g1600 781303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1600 892 Gene3D Transferase(Phosphotransferase) domain 1 731 885 - -
Vvi18g1600 892 SUPERFAMILY RNI-like 243 565 - -
Vvi18g1600 892 SUPERFAMILY L domain-like 56 304 - -
Vvi18g1600 892 Gene3D Phosphorylase Kinase; domain 1 645 729 - -
Vvi18g1600 892 Gene3D Ribonuclease Inhibitor 310 591 IPR032675 -
Vvi18g1600 892 ProSitePatterns Protein kinases ATP-binding region signature. 661 684 IPR017441 GO:0005524
Vvi18g1600 892 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Vvi18g1600 892 Pfam Protein kinase domain 747 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1600 892 Pfam Protein kinase domain 656 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1600 892 ProSiteProfiles Protein kinase domain profile. 655 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1600 892 SUPERFAMILY Protein kinase-like (PK-like) 653 877 IPR011009 -
Vvi18g1600 892 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Vvi18g1600 892 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 746 - -
Vvi18g1600 892 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 750 882 - -
Vvi18g1600 892 Gene3D Ribonuclease Inhibitor 182 239 IPR032675 -
Vvi18g1600 892 Gene3D Ribonuclease Inhibitor 240 307 IPR032675 -
Vvi18g1600 892 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 12 746 - -
Vvi18g1600 892 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 750 882 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g822 Vvi18g1600 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76363 PF00069 Pkinase 6.90E-10 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1600 - - vvi:100260256 1552.73