Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g458 ATGATAAAAACATATTTGATTTTTAACAAATCTCTCTCTGTGCTTTCTTCTCTCCATGGTTCTTTAATGGCGATGAAGCATAGAAAGCTCTTCCCGACGCAAACCGCAACGAATCAGAGTGTGGACTGTCTAGATTTCTGTGACTCGACATGTCCTTACAACTGCTACATTTATCCAGACTCCTTGATTCCCCCCCCACCACCAGCATCCCCACGTCCACCAACTCTCTCCACCCTTGATCAGAATGATTCCCCCAACATCTCACCCTACGTGATCATCACAGTTGCCTTACTAGCGGGCTTCTTCCTTCTAGTCTGTTTCAACGCCATCATAGTCAAGTACTGTTGTGGTTGGAGAAGAAGAAATCGCTCTCCACCATCTGAATCAGACGGCAGAGACGAAGAGTTTCTTGATGAGAATCGAGGCCCGGCAATCGACCATCCCATCTGGTTTATCACCACCGCTGGTCTGCAACAAGCGATCATTAATTCAATTACCGTCTGCAAGTATAAAAGAGGTGAGGGCTTGATTGAAGGGACCGAGTGTTCGGTTTGTCTGAGTGAATTTCAGGAAGATGAAACTCTTCGGTTGCTACCCAAGTGTAACCATGCTTTTCACATCCCTTGTATAGATACATGGTTGAGCTCACACACCAATTGTCCCTTATGTCGTGCACGTATTATCTCTGACATTGTCAACCCTCCTCTGGAATCAAATGATCAAAATTCTCGTAGTTTGGGTCCAAATGAACAGACCCAGATGGAGAATTCTAGTAACGATACTGAATTGGATAACAATCTGATGAATCCAAAGGGAATTGGGTTGATGAGACTATGGATGGGCGAAAATTTGATTCAGGTAGCGTTCCAAAGAGGGATGTTGCATATACAAGCACCTTCAGACAGATGGGGAGTCCTTCCATTGCGCAGTGTTTGCATAAAGGCCCTATTTCAATGA 957 44.72 MIKTYLIFNKSLSVLSSLHGSLMAMKHRKLFPTQTATNQSVDCLDFCDSTCPYNCYIYPDSLIPPPPPASPRPPTLSTLDQNDSPNISPYVIITVALLAGFFLLVCFNAIIVKYCCGWRRRNRSPPSESDGRDEEFLDENRGPAIDHPIWFITTAGLQQAIINSITVCKYKRGEGLIEGTECSVCLSEFQEDETLRLLPKCNHAFHIPCIDTWLSSHTNCPLCRARIISDIVNPPLESNDQNSRSLGPNEQTQMENSSNDTELDNNLMNPKGIGLMRLWMGENLIQVAFQRGMLHIQAPSDRWGVLPLRSVCIKALFQ* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5000080 5001793 + Vvi18g458 Vvi18g458 780161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g458 318 Pfam Ring finger domain 181 224 IPR001841 -
Vvi18g458 318 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 24 268 - -
Vvi18g458 318 ProSiteProfiles Zinc finger RING-type profile. 182 224 IPR001841 -
Vvi18g458 318 MobiDBLite consensus disorder prediction 234 266 - -
Vvi18g458 318 CDD RING-H2_PA-TM-RING 181 224 - -
Vvi18g458 318 SMART ring_2 182 223 IPR001841 -
Vvi18g458 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 230 IPR013083 -
Vvi18g458 318 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 268 IPR044675 -
Vvi18g458 318 SUPERFAMILY RING/U-box 175 234 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g981 Vvi18g458 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g458 - - vvi:100854240 508.834