Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g508 ATGGAGGAAGGAAGCAACAACAGGGCTGAGGCCGAACGCCTACTGGGTGTCGCCGAGAAGCTTTTGCATACCCGTGATTTCAATGGCTCTAAAGACTTCGCAATTCTCGCCCAGGAGACCGAGCCCCTCCTCGACGGCACCGATCAGATCTTGGCCGTCGCTGACGTCCTCATCGCCTCTGAAAAGCGCATCAACAACCACCACGATTGGTACGCCATCTTGCAGACCGACCGCCGATCCGATGACCTTGATCTCATCAAGAAACAGTATAGGAGACTCGCTCTCCTTCTGCACCCGGACAAGAACAAGTTCGTCTTCGCCGATCACGCCTTCAAGCTTGTGGCGGACGCCTGGGCGGTCCTCTCCGACCCCGCTAAGAAGTCGCTTTACGACAACGAGCTCAGCCTCTTCTCCAAAGTCGATCTCGCGGCCTCCGGCTCGTCCGATGATCAACGGCCGTTGCGGCTAACGAGTTTTTGGACAGCCTGTCCATATTGTTATATATTGTATGAGTACCCTAGGGTTTACGAGGGTTGTTGTTTGAGGTGTCAGAATTGCCAGAGGGCGTTTCACGCGGCATTGGTACCGTCGTTGCCGCCGTTGGTGCCGGGCAAGGAGGCCTATTACTGCTGCTGGGGTTTCTTTCCGCTAGGGTTTGCAATTTCTGGGGCAGAGGGCGGAAAGGGTAAGGGTGCGGGAGGGTTTCCAAATTGGATGCCACCCATGTTTGGAGGTGGAGTTGCGGCGGAGGGCGGTGGCGGGAGTGCTGGTGGGGTTGGGGTCGTAGAGGTGTCGGACGGAAGTGCATCAGCTGGATTGGTGAAGCCGAAGAGGAGGGGAAGACCTCCAAAGAAGGCAGTCCACCCAATCTTGCTATTCAATGTTGTTTTGTTTTGTAGATTTTGGCTCTCAATCTTTTGTTCTTGGACTGCCTGTAAATTATATTTTGCAGTAATGTCATTCCCTCTAGTTTTCTGCAATACACTCCCCACCTTTTCCCCCCTCTTGATTGTATTTCTTGCTCGAGAGTCGAGAGTTATAAATACATACACCATAATTCTTTTCAAAATGTCTATCATCATTTAG 1086 52.49 MEEGSNNRAEAERLLGVAEKLLHTRDFNGSKDFAILAQETEPLLDGTDQILAVADVLIASEKRINNHHDWYAILQTDRRSDDLDLIKKQYRRLALLLHPDKNKFVFADHAFKLVADAWAVLSDPAKKSLYDNELSLFSKVDLAASGSSDDQRPLRLTSFWTACPYCYILYEYPRVYEGCCLRCQNCQRAFHAALVPSLPPLVPGKEAYYCCWGFFPLGFAISGAEGGKGKGAGGFPNWMPPMFGGGVAAEGGGGSAGGVGVVEVSDGSASAGLVKPKRRGRPPKKAVHPILLFNVVLFCRFWLSIFCSWTACKLYFAVMSFPLVFCNTLPTFSPLLIVFLARESRVINTYTIILFKMSIII* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5687067 5688394 - Vvi18g508 Vvi18g508 780211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g508 361 ProSiteProfiles dnaJ domain profile. 69 134 IPR001623 -
Vvi18g508 361 SUPERFAMILY Chaperone J-domain 63 134 IPR036869 -
Vvi18g508 361 Gene3D DnaJ domain 56 146 IPR036869 -
Vvi18g508 361 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 246 - -
Vvi18g508 361 ProSitePatterns Nt-dnaJ domain signature. 111 130 IPR018253 -
Vvi18g508 361 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 246 - -
Vvi18g508 361 CDD DnaJ 69 123 IPR001623 -
Vvi18g508 361 Pfam DnaJ domain 69 131 IPR001623 -
Vvi18g508 361 PRINTS DnaJ domain signature 71 89 IPR001623 -
Vvi18g508 361 PRINTS DnaJ domain signature 90 105 IPR001623 -
Vvi18g508 361 PRINTS DnaJ domain signature 106 126 IPR001623 -
Vvi18g508 361 SMART dnaj_3 68 126 IPR001623 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g904 Vvi18g508 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g508 - - vvi:100260770 514.227