Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g907 ATGGGGGATGGTGAGGAAAGCACACCTCCCAAGTCTTCTAAACCACCTGCTTCAACACAGGAGACACCATCAACCCCTTCTTATCCTGACTGGTCAACATCTATGCAGGCCTACTATGGTGCTGGAGCTACTCCGCCTCCTTTTTTCCCTTCTCCTGTTGCACCCCCATCCCCTCATCCGTACCTATGGGGAGGTCAGCATCCTATGATGCCACCATATGGAACTCCACTTCCATACCCAGCTCTCTATCCTCGTGGGGCCCTCTATGCTCATCCTAGCATGGCTACGGCTCAGGGTGTGGCACTGACAAATACCGACATGGAAGTAAAGACCCCTGATGGAAAAGACCCAGCATCAATTAAAAAATCAAAGGCAGCTTCAGGAAACATGGGTTTGATTAGTGGAAAATCTGGGGAAAGCGGAAAGGCAGCTTCAGTTTCTGGCAATGATGGTGCTTCACAAAGTGGGGAGAGTGGTAGTGAGGCCTCATCAGATGCGACTGATGAGAATGCTAACCAAGCATCTTCTGCAGTAAAGAAGAGAAGCTTCAACCTTGCTGATGGATCAAATGCAAAGGGTAACAGTGCTGCTCAGTACACTGGTGGAAATCATTCAGCCTCAGTTCCAGGCAAGCCTGTGGTACCTATGCCTACAACCAGTTTAAATATTGGGATGGACCTGTGGAATGCATCCCCTGCTGGAGGCACACCCATGAAGACAAGACCACAGTCATCTGGTGCCTCACCTCAAGTGGCTTCAGCAACTATAGTTGGACGTGAAGGCATGTTACAGGATCATCAATGGATTCAAGATGAACGTGAACTCAAACGACAAAGGAGAAAGCAATCCAATAGGGAGTCAGCTAGGAGATCAAGATTGCGTAAGCAGGCTGAATGTGAAGAATTACAATCAAAGGTTGAAATTTTGAGCAATGAGAATCATGTGCTGAGAGAGGAGCTGCATAGGCTTGCTGAGCAGTGCGAGAAGCTTACATCTGAGAATAATTCCATAATGGAGGAGTTGACACAATTGTATGGGCCAGAGGCAACATCTAGCCTTCAAGATAACAACCACAACTTGGTTCTCCATCCTATCAATGGTGAAGACGATGGCCATGTACAAGATGCTTCCCCTCTAAACAACTCCAGTTCCACGTCTGATCAAAATGGGAAATTCAGCTCCAATGGGAAGATTTGA 1197 47.54 MGDGEESTPPKSSKPPASTQETPSTPSYPDWSTSMQAYYGAGATPPPFFPSPVAPPSPHPYLWGGQHPMMPPYGTPLPYPALYPRGALYAHPSMATAQGVALTNTDMEVKTPDGKDPASIKKSKAASGNMGLISGKSGESGKAASVSGNDGASQSGESGSEASSDATDENANQASSAVKKRSFNLADGSNAKGNSAAQYTGGNHSASVPGKPVVPMPTTSLNIGMDLWNASPAGGTPMKTRPQSSGASPQVASATIVGREGMLQDHQWIQDERELKRQRRKQSNRESARRSRLRKQAECEELQSKVEILSNENHVLREELHRLAEQCEKLTSENNSIMEELTQLYGPEATSSLQDNNHNLVLHPINGEDDGHVQDASPLNNSSSTSDQNGKFSSNGKI* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 10309575 10313870 + Vvi18g907 Vvi18g907 780610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g907 398 MobiDBLite consensus disorder prediction 362 398 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 140 205 - -
Vvi18g907 398 CDD bZIP_plant_GBF1 277 327 IPR045314 GO:0003700|GO:0006355
Vvi18g907 398 SUPERFAMILY Leucine zipper domain 275 331 IPR046347 GO:0003700|GO:0006355
Vvi18g907 398 SMART brlzneu 272 336 IPR004827 GO:0003700|GO:0006355
Vvi18g907 398 Pfam bZIP transcription factor 272 334 IPR004827 GO:0003700|GO:0006355
Vvi18g907 398 Pfam Disordered region downstream of MFMR 119 233 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 45 62 - -
Vvi18g907 398 PANTHER G-BOX-BINDING FACTOR 1 1 363 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 11 39 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 1 77 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 375 398 - -
Vvi18g907 398 Gene3D - 275 331 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 273 295 - -
Vvi18g907 398 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Vvi18g907 398 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 274 337 IPR004827 GO:0003700|GO:0006355
Vvi18g907 398 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 279 294 IPR004827 GO:0003700|GO:0006355
Vvi18g907 398 MobiDBLite consensus disorder prediction 236 252 - -
Vvi18g907 398 MobiDBLite consensus disorder prediction 107 252 - -
Vvi18g907 398 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 363 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi18g907 398 Coils Coil 285 340 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g930 Vvi18g907 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14370 PF16596 MFMR_assoc 7.40E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g907 K09060 - vvi:100250676 758.059