Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1138 ATGGACCTCTCAATCCCTCACACGACACTATACCCATTTCACCTTTGTTCTTCGAAGCCACTGTTATTTAATCAAAACTCCTCAAATCTCGTTCTCTTCAAGCCACTCTCTTTACCTTCTTCTAATCGCAGAAGATCACGTCAGTACCACAAAAGACCAGTTTTTGTTGCTGCTTCGTCTGCAAACCCAAGTGGGCCAAATGGGTTTTCTTGGCTCGGTCTGGCTTATTCGATTCAGCGTGGGTCGGAGCGGTTCTGGGTGCAATTTGGGGGTCTGGTGAAGAGGGAAACTGGGTTTGACTTGGAAGATGCTAATTCGAAGGTGAACGAGTTTGTGGGCCCAGTTCGTGGTGCGATGAAGAGAGGTGAGGATGGGTTGGATCGGTTTAGGACTGAGTTGCTTCCAGAGTTTGTGAATTGGAATCGGTGGGAGCGTTGGAAGGATCTCAAGAATTGGGAAGCTAAACGAATTGGCGCCCTGATTCTCTATACATTTGTTGTGATAATATCTTTTCGAGGTATATATTTGGCATTTCAAGCCCCTCGTCTAGATCGTCAAAGAAAAGAGGTCACAGAGGCTTATATGGAGGCACTGATTCCTGAGCCATCTCCAAGTAATATTAGAAAGTTTAAAAAGGGCATGTGGAGGAAGACAATACCTAAAGGTCTGAAAATGAAGAAATTCATTGAAAGACCTGATGGAACCTTAATTCATGATAGTTCTTATGTTGGGGAAGATGCATGGAGTGATGATCCAGAGCCTCAGGACAATGTGAATCAAATTATTGACAGTAATGTAAAATTAAATGCAGAAGTAAAGAAAGAACTGAAGGAGGACTTGGGCATTTCAGGTAAAGATCAACAAAATAGTGGAACATGGCGTGAAAGGCTTAATACATGGAAGGAAATTCTCAAGAAGGATAAGTTAAAGGAGGATTTAGAATCCTTAAATGCCAAATATGCAGTTGAATTTGACATGAAAGAAGTGGAAAACAGCCTTCGCAAGGATGTGGTAGAAAAGGTACCAGAGTCAAATGGGACTAGAGCACTGTGGATTTCCAAGAGATGGTGGCGCTATCATGTGAAATTCATTCACACATTCTTTTTGCAAATGGGTGACTGCATGTTTTGCTCAGGTATTGTTGCTGCAATTGTCTTCACTGAGGATCTGAAAAAATTGTATGTAACAATGAGAGAAGGATTTCCCTTAGAATACATTGTTGATATTCCCCTTGACCCACACTTGTTTGAGATGATCTCAAGCTCTGGAGTTGAAGTAGATCTCCTTCAGAGGCGACAAATCCATTACATTTTTAAAGTTGTGATTGCATTGGTACCTGGAATATTGATCTTGTGGTGTATAAGAGAGTCTGTGATGCTTCTTCATGTTACTTCAAAGCGCTTTCTATATAAAAAGTATAATCAACTTTTTGATATGGCTTATGCAGAAAACTTTATCCTGCCAGTTGGAGATGGTGAAACAAAATCAATGTACAAAGAAGTAGTATTAGGGGGTGATGTTTGGGACCTTCTGGACGAGTTAATGATTTATATGGGAAACCCCATGCAGTACTATGAAAGAGGTGTACCATTTGTCCGGGGTGTTCTTCTCTCTGGTCCTCCGGGCACAGGAAAAACTCTTTTTGCACGGACGCTTGCAAAGGAAAGTGGGATGCCCTTTGTCTTTGCATCTGGTGCAGAGTTCACAGATAGTGAAAAAAGTGGTGCAGCAAGGATTAATGAAATGTTTTCAATTGCAAGGAGAAACGCTCCTTGTTTTGTATTTGTGGATGAAATTGATGCTATTGCTGGAAGGCATGCAAGGAAAGATCCACGAAGAAAGGCAACATTTGAGGCTTTGATAGCACAGCTTGAGGGAGAGAAGGAAAAAACTGGTGTTGATCGGTTTTCACTTAGACAAGCTGTGATATTCATCTGTGCTACCAATCGACCAGATGAATTGGACCTAGAATTTGTTCGTTCTGGACGCATTGACCGTCGGCTGTACATTGGTTTACCTGATGCAAAGCAGCGGGTACAAATTTTTGGTGTGCACAGTGCAGGAAAACAGCTTGCTGAAGATGTGGACTTTGGAAAACTTGTTTTCCGCACTGTTGGTTATTCTGGGGCAGATATTCGAAATCTTGTCAATGAAGGAGCAATAATGTCTGTGAGAAAAGGTCATTCCAAGATATACCAGCAGGATATTGTTGATGTGTTAGATAAACAATTGCTTGAGGGAATGGGCGTGCTCCTTACGGAGGAAGAGCAACAGAAATGCGAAGAAAGTGTGAGTTTTGAAAAGAAAAGACTGCTGGCTGTACATGAAGCTGGTCACATAGTGTTAGCTCACTTGTTTCCTCGATTTGACTGGCATGCATTTTCTCAGCTCCTGCCTGGTGGCAAGGAAACTGCAATATCTGTTTTTTACCCCAGAGAAGATATGTTAGACCAGGGTTACACGACCTTTGGCTATATGAAAATGCAAATGGTGGTTGCTCATGGTGGCCGATGTGCTGAACGTGTTGTGTTTGGCGATGAGATAACTGATGGAGGAAGGGATGACCTAGAAAAGATTACGAAGATTGCTAGAGAGATGGTAATCAGCCCAGCAAATTCAAGGTTGGGGCTTACTGCTTTGACAAAACGAGTGGGGTTAATGGATAGACCTGATAGTCCAGATGGCGAGTTAATAAAGTACAGGTGGGATGACCCTTTTGTGATTCCTGCCAACATGACACTTGAAGTATCTGAGCTGTTCAGTCGAGAATTAACAAGGTACATTGAAGAGACAGAAGAAATTGCAATGAGTGGTTTGAAGGTGAACAGGCACATATTGGATATGATTACAAACGAACTGTTGGAAAATTCAAGGATAACTGGATTGGAAGTTGATGAGAAAATGAAGGGACTCTCTCCAATAATGTTCGAGGATTTTGTGAAACCATTCCAAATAAACTTAGAAGAGGAGGGACCCTTGCCTCACAATGATCGGGTGAGATACCAGCCACTGGACATATATCCTGCTCCACTCCACAGATGTTAA 3045 42.1 MDLSIPHTTLYPFHLCSSKPLLFNQNSSNLVLFKPLSLPSSNRRRSRQYHKRPVFVAASSANPSGPNGFSWLGLAYSIQRGSERFWVQFGGLVKRETGFDLEDANSKVNEFVGPVRGAMKRGEDGLDRFRTELLPEFVNWNRWERWKDLKNWEAKRIGALILYTFVVIISFRGIYLAFQAPRLDRQRKEVTEAYMEALIPEPSPSNIRKFKKGMWRKTIPKGLKMKKFIERPDGTLIHDSSYVGEDAWSDDPEPQDNVNQIIDSNVKLNAEVKKELKEDLGISGKDQQNSGTWRERLNTWKEILKKDKLKEDLESLNAKYAVEFDMKEVENSLRKDVVEKVPESNGTRALWISKRWWRYHVKFIHTFFLQMGDCMFCSGIVAAIVFTEDLKKLYVTMREGFPLEYIVDIPLDPHLFEMISSSGVEVDLLQRRQIHYIFKVVIALVPGILILWCIRESVMLLHVTSKRFLYKKYNQLFDMAYAENFILPVGDGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQYYERGVPFVRGVLLSGPPGTGKTLFARTLAKESGMPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRKATFEALIAQLEGEKEKTGVDRFSLRQAVIFICATNRPDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKQLAEDVDFGKLVFRTVGYSGADIRNLVNEGAIMSVRKGHSKIYQQDIVDVLDKQLLEGMGVLLTEEEQQKCEESVSFEKKRLLAVHEAGHIVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREDMLDQGYTTFGYMKMQMVVAHGGRCAERVVFGDEITDGGRDDLEKITKIAREMVISPANSRLGLTALTKRVGLMDRPDSPDGELIKYRWDDPFVIPANMTLEVSELFSRELTRYIEETEEIAMSGLKVNRHILDMITNELLENSRITGLEVDEKMKGLSPIMFEDFVKPFQINLEEEGPLPHNDRVRYQPLDIYPAPLHRC* 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 22854357 22885790 + Vvi19g1138 Vvi19g1138 782637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1138 1014 CDD AAA 533 672 - -
Vvi19g1138 1014 SMART AAA_5 531 674 IPR003593 -
Vvi19g1138 1014 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 26 1014 - -
Vvi19g1138 1014 Pfam ATPase family associated with various cellular activities (AAA) 535 671 IPR003959 GO:0005524|GO:0016887
Vvi19g1138 1014 Pfam AAA+ lid domain 694 736 IPR041569 -
Vvi19g1138 1014 Pfam Peptidase family M41 764 965 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi19g1138 1014 Gene3D - 489 673 IPR027417 -
Vvi19g1138 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 742 IPR027417 -
Vvi19g1138 1014 Gene3D Peptidase M41 757 972 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi19g1138 1014 PANTHER ATP-DEPENDENT PROTEASE 26 1014 - -
Vvi19g1138 1014 SUPERFAMILY FtsH protease domain-like 766 978 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vvi19g1138 1014 Gene3D - 674 745 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1138 K03798 - vvi:100244978 1980.68