Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g428 ATGGAATGTGTGATTGCATGCCTGAGTTCAGCAGTATCATCGTTTTCTGAACATCTTTGTGGCTTGATCTGCTCCAAAGTTGGGAATCCCTTCACCTTCAAGTCTAATTATAGTCATCTGCAACAGGAGCTGCAACGTCTAAACGATCTGAAATCCACAGTGGAAAGGGACCACGATGAATCGGTTCCAGGAGTAAATGACTGGTGGAGAAATGTTGAAGAAACTGGCTGTAAAGTGAGACCGATGCAAGCAAAGATAGAAGCCAACAAAGAGAGGTGTTGTGGTGGCTTCAAAAATCTCTTTCTGCAAAGCAGGGAAGTGGCAGAGGCACTGAAGGAGGTGCGAGGACTTGAGGTACGTGGAAATTGCCTTGCCAATTTGCTGGCTGCCAATCGTGAAGCAACAGCAGTGGAGCATATGCCTGTGGAATCAATTGTTCATCAACCCGCAGCATCCAAAAATTTAGCCACAATTATGAATCTGCTGAATGACGATACAGTTAGAATAATTGGGGTTTGGGGTCTGGGAGGAATAGGCAAAACTACTCCAGTTAAGAATTTGAACAACATGCTTAAGGATGCCTCTTCAACTACTCCACCTTTTAGCATTGTCATATGGATCACCCTGTCCAGGGAGTGGGACCACAAAAGCATCCAGGCACAAATTGCTCGGAGATTGAATATGAAGGTGAATACCGAAGACAGCACTGAGAGTCTGGCTGCCAGATTGTGTGAAAGACTGAAGAGGGAAGAAAAGTTTCTCCTCCTTCTAGATGATGTTTGGAAGGAAATTGATTTGGATGATTTGGGTATTCCCCGACCTGAAGACCACGTGGCTTGTAAAATCATATTGACAACCAGATTTTTAAATGTTTGCCGAGGGATGAAAACAGACAGAGAGATTCCCATTCATGTCCTAAACGATGATGAAGCTTGGAAATTGTTCTGTAAAAATGCAGGGGAGGCAGCCATTTTAGAAGACGTTGAACCAGTTGCGAGGGCAATAACTAAGGAGTGTGGAGGATTGCCCTTGGCAATAAATATGATGGGAACATCCATGAGAAAGAAGACTAGCAAACACCAGTGGGAGCATGCATTGAAGGAGCTGCAAAGGTCAGTGCCGCATAACATCTACGGGGTAGAGGATAGGGTTTACAAGCCTTTAAAGTGGAGTTATGATTCCTTGCAAGGTAACATCCAATCTTGCTTTTTGTATTGCTCTTTATATCCTGAGGATTTCTCAATTAAAATAAGTGAACTTGTACAATGCTGGCTGGGGGAAGGCCTTTTAGATGTAGATGAACAACAAAGCTATGAGGATATCTACAATAGTGGAGTTGCTTTAGTTGAAAATCTCAAGGATTGTTGTTTGCTGGAAAATGATGATGATGACAAAAGCGGCACTGTGAAGATGCATGATCTAGTTCGTGATGTCGCGATTTGGATTGCATCCTCCTCAGAGGATGAATGTAAATCTCTTGCCTCCACTTTGATTTTACAAAATAATAACAAACTTAAGATAGTTCCTGAGGCATTCCTGCTCGGATTTCAAGCACTCAGGGTCTTGAATCTAAGTAATACCAACATCCAGCGATTGCCTCTTTCCCTCATCCACCTTGGTGAACTTCGTGCCCTTTTATTAAGCCAATGTGGTAGGCTCAATGAATTACCCCCTGTGGGGCGGCTTAGTAAACTACAAGTGCTGGATTGCAGTAATAGTGGTATCCTGAAATTGCCAGAAGGGATGGAGCAGTTGAGCAACTTACGGGAATTAAACTTGTCAGGCACTTGGGGGTTGAAAACCTACGGAGCTGGATTGGTATCAAGGCTGTCTGGTTTAGAGATTCTGGACATGAGTGAGAGTAACTGTAGATGGTGTCTGAAGACAGAGACAAACGAGGGAAACGCAGCACTACTTGAGGAGCTAGGATGGCAGACCTCAATGCCATATCCCGTTGCTCCAAACTTGCAGAAAATAGCGTTATCATTGCTTCCCAACTTGAAGACTTTAAGCAGACAAGAAGAAACATGGCAACATCTAGAGCATATTTATGTGAGAGAGTGTAGAAATCTGAAGAAGCTACCTTTGAATGAGCAAAGTGCAAATACTTTGAAAGAGATAAGAGGAGAGGAGGAGTGGTGGAAGCAATTGGAGTGGGATGATGATGTTACCAGCTCCACTCTCCAGCCACTTTTCAAAGTTCCAGCTTTCTGA 2214 43.59 MECVIACLSSAVSSFSEHLCGLICSKVGNPFTFKSNYSHLQQELQRLNDLKSTVERDHDESVPGVNDWWRNVEETGCKVRPMQAKIEANKERCCGGFKNLFLQSREVAEALKEVRGLEVRGNCLANLLAANREATAVEHMPVESIVHQPAASKNLATIMNLLNDDTVRIIGVWGLGGIGKTTPVKNLNNMLKDASSTTPPFSIVIWITLSREWDHKSIQAQIARRLNMKVNTEDSTESLAARLCERLKREEKFLLLLDDVWKEIDLDDLGIPRPEDHVACKIILTTRFLNVCRGMKTDREIPIHVLNDDEAWKLFCKNAGEAAILEDVEPVARAITKECGGLPLAINMMGTSMRKKTSKHQWEHALKELQRSVPHNIYGVEDRVYKPLKWSYDSLQGNIQSCFLYCSLYPEDFSIKISELVQCWLGEGLLDVDEQQSYEDIYNSGVALVENLKDCCLLENDDDDKSGTVKMHDLVRDVAIWIASSSEDECKSLASTLILQNNNKLKIVPEAFLLGFQALRVLNLSNTNIQRLPLSLIHLGELRALLLSQCGRLNELPPVGRLSKLQVLDCSNSGILKLPEGMEQLSNLRELNLSGTWGLKTYGAGLVSRLSGLEILDMSESNCRWCLKTETNEGNAALLEELGWQTSMPYPVAPNLQKIALSLLPNLKTLSRQEETWQHLEHIYVRECRNLKKLPLNEQSANTLKEIRGEEEWWKQLEWDDDVTSSTLQPLFKVPAF* 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5477936 5482499 + Vvi19g428 Vvi19g428 781927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g428 737 PANTHER DISEASE RESISTANCE PROTEIN RP 638 725 IPR044974 GO:0006952
Vvi19g428 737 PANTHER DISEASE RESISTANCE PROTEIN RP 491 624 IPR044974 GO:0006952
Vvi19g428 737 PANTHER DISEASE RESISTANCE PROTEIN RP 17 494 IPR044974 GO:0006952
Vvi19g428 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 406 IPR027417 -
Vvi19g428 737 Pfam Leucine rich repeat 496 550 IPR001611 GO:0005515
Vvi19g428 737 Gene3D - 392 480 IPR036388 -
Vvi19g428 737 PRINTS Disease resistance protein signature 169 184 - -
Vvi19g428 737 PRINTS Disease resistance protein signature 247 261 - -
Vvi19g428 737 PRINTS Disease resistance protein signature 339 353 - -
Vvi19g428 737 PRINTS Disease resistance protein signature 560 576 - -
Vvi19g428 737 PANTHER OS12G0491200 PROTEIN 491 624 - -
Vvi19g428 737 PANTHER OS12G0491200 PROTEIN 17 494 - -
Vvi19g428 737 PANTHER OS12G0491200 PROTEIN 638 725 - -
Vvi19g428 737 Gene3D Ribonuclease Inhibitor 482 726 IPR032675 -
Vvi19g428 737 Gene3D - 305 391 IPR042197 -
Vvi19g428 737 Coils Coil 37 60 - -
Vvi19g428 737 SUPERFAMILY L domain-like 466 706 - -
Vvi19g428 737 Pfam NB-ARC domain 160 393 IPR002182 GO:0043531
Vvi19g428 737 Gene3D - 130 301 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g145 Vvi19g428 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g428 K13459 - vvi:100260669 1258.05