Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1000 ATGCTCAACCACATCTATCCATGGAGGTCTTTACTCCGAAAATCTCTCAACCTCAGCCCCATCACTTCCCTCGGCTTCACCAAACACTCAGTCTCTGCCGCCAAGCTCCATGATGAGTCCGCCGACGCCTCTATCCCTAATGACGCCGTTCGCCAAATCCTCATTGGTTTAAGAAGCTTTGGTGCTTCTAAGTTTCTCTGGGGGCATCATTTCCAAACCCTAGCTTCGGTACTGAATACCCATCAGGTTGATCAAATTCTCCTTAGTTTGAGAGTCGATAACTCCGACTCTGCGCTTTTTTTGTTTGATTTATTAAGAAATGAGTATGGATTTCGGCATTCTAGGGTTTCCTGGTTCATTGTTTCGCATGTTGTGGCCCGAAAAGGACAGTCCAAGGAGTTGCGCCGCGTTTTAAACCAAATGGTGGAAGAAGAAGGTTCTGGGTCTGCGCCTTCCCTTTGTGAGCTTCTGTGTAATAGCTTCAGGGACTGGGATTTGAATAATGTGGTATGGGATATGCTGGCTTGTGCTTATTCAAGGGCTGAGATGGTTCATGATGCCCTTTTTGTTCTTGCTAAGATGAAAGTCCTGAACTTGCAAGTTTCAATAGCAACCTACAACAGTTTGTTGTACAACCTTAGGCACACTGATATTATGTGGGACGTCTATAATGAAATCAAAGCAAGTGGGGTTCCACAGAATGAGTACACAAATCCCATCCTTATAGATGGTCTGTGCAGGCAGTCCAGGCTACAAGATGCAGTAACTTTCTTGAGGGAGACCGGGGGGGAAGAGTTTGGGCCTTCTGTTGTTTCATTCAATGCCCTCATGTCAGGGTTTTGTAAAATGGGTTCTGTGGATGTTGCAAAGTCATTTTTCTGCATGATGATTAAATATGGATTACTTCCTGATGTGTATAGTTACAATATTCTTCTTCATGGGCTATGTGTAGCAGGTTCTATGGAAGAAGCATTAGAGTTTACAAATGACATGGAGAATCATGGAGTGGAACCTGATATAGTTACCTATAACATTCTTGCTAATGGTTTTCGCATACTTGGTTTGATAAGTGGGGCTTGGAAGGTTGTTCAGAGAATGCTGCTTAATGGGTTAAATCCAGATCTCGTTACATATACAATACTGATCTGTGGGCATTGCCAGATGGGCAATATTGAAGAAAGCTTTAAGTTGAAGGAGAAAATGCTTTCACAAGGTTTAAAGTTGAGTATTGTCACATACACTGTATTGTTAAGCAGTTTGTGTAAGAGTGGACGAATTGATGAAGCAGTGATATTGCTTCATGAAATGGAAGTTATTGGCTTGAAGCCAGATCTTTTAACATATTCTCGAGGGGCAGTAGAAGAGGCTATTGAACTATATGAGGAAATGTGCTCCAAGAGAATTTACCCAAATTCTTTTGTATGCAGCGCTATTATATCAGGTCTTTTTGAAAAAGGGGCAATTTCAGAGGCACAAATGTATTTTGATTCAGTAACAAAGAGTGATGTGGCAGAGGAAATCATTTTGTACAATATTATGATTGATGGGTATGCAAAACTTGGTAATATTGGGGAAGCTGTACGGTCATACAAACAGATAATCGAAAAAGGAATTTCTCCAACTATTGTGACTTTCAATTCCCTTATTTATGGTTTCTGCAAAAAGGGAAAGCTAGCTGAGGCTGTAAAGTTATTAGATACTATCAAGGTGCATGGTTTGGTGCCAACTTCTGTAACTTACACGACTCTAATGAATGGATACTGTGAAGAGGGAGATATGCATAGCATGTTTGACATGCTTCATGAAATGGAAGCAAAAGCTATAAAACCTACTCAAATCACTTATACTGTAGTTGTGAAAGGACTCTGCAAAGAGGGGCGGCTGCATGAATCTGTTCAATTACTCAAGTATATGTATGCTAGGGGTCTATTCCCAGATCAAATCACATATAATACTGTAATTCAAAGCTTCTGCAAAGCTCATGACCTACAAAAAGCTTTTCAGTTACACAATCAAATGTTACAGCATAGTCTTCAGCCTAGTCCTGTTACATATAATGTTCTTATTAATGGCCTTTGTGTATATGGCAACTTAAAGGATGCTGATAGACTACTGGTTACTCTTCAGGACCAAAGTATAAGATTAACAAAGGTTGCCTACACAACAATAATCAAAGCACATTGTGCTAAGGGTGATGTACAGAATGCACTGGTCTTCTTCCATCAAATGGTGGAGAGGGGTTTTGAGGTTTCCATCAGAGATTATAGTGCTGTGATCAATAGATTGTGCAAAAGGAATTTAATAACTGATGCAAAATTTTTTTTCTGTATGATGTTAACTCATGGCATTCCTCCTGATCAAGATATTTGTTTGGTGATGCTCAATGCTTTCCATCGAAGTGGTGATCCCAATTCAGTATTTGAGATATTTGCTATGATGATAAAATGTGGCCTGCTTCCTGTTTAA 2466 40.02 MLNHIYPWRSLLRKSLNLSPITSLGFTKHSVSAAKLHDESADASIPNDAVRQILIGLRSFGASKFLWGHHFQTLASVLNTHQVDQILLSLRVDNSDSALFLFDLLRNEYGFRHSRVSWFIVSHVVARKGQSKELRRVLNQMVEEEGSGSAPSLCELLCNSFRDWDLNNVVWDMLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLPV* 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15701473 15704472 + Vvi1g1000 Vvi1g1000 770200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 263 354 IPR011990 GO:0005515
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 712 820 IPR011990 GO:0005515
Vvi1g1000 821 SUPERFAMILY HCP-like 451 567 - -
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 503 593 IPR011990 GO:0005515
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 69 214 IPR011990 GO:0005515
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 450 502 IPR011990 GO:0005515
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 786 820 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vvi1g1000 821 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 16 818 - -
Vvi1g1000 821 Pfam PPR repeat family 373 422 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat family 268 316 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat family 645 693 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat family 718 764 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat family 575 624 IPR002885 -
Vvi1g1000 821 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 16 818 - -
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 215 262 IPR011990 GO:0005515
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 355 449 IPR011990 GO:0005515
Vvi1g1000 821 Gene3D Tetratricopeptide repeat domain 594 711 IPR011990 GO:0005515
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 751 785 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat 169 197 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat 341 371 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat 792 818 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat 451 467 IPR002885 -
Vvi1g1000 821 Pfam PPR repeat 536 567 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 681 715 IPR002885 -
Vvi1g1000 821 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 718 751 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 755 786 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 411 444 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 648 681 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 271 305 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 543 576 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 376 409 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 683 714 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 509 541 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 306 340 IPR002885 -
Vvi1g1000 821 TIGRFAM PPR: pentatricopeptide repeat domain 578 611 IPR002885 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1000 - - vvi:100256494 1635.16