Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g106 ATGAAAGCTTTGAGGGGTTTAAGAGCCCTCACAACCCTCTCTTCCAAAACCCAGAAACCCCACCTCACTTCCAATCTTCTCTATCGCTTCTACGCCGCCCAACCTCAGCAACAAGACCACTCCACAACCACCAACTCCCTCGAAGACCACGAAGACGATGACGCCGTTTTCGACAGTTCCCAATTCGCATTACCCAACATGGGTACGTCCCCGGTCCCCGATCAACCCACTTGGGACCGGGAGTACAGGGCTAAGGCTGACCGTACCATCTTCGGCGAGGAGACCCAGAAGCAGAAGTCCGAAGAAGACGAGAGGAAACGCCGGGCCATTGTGCTTGCGAAGGCTCTGCTTGAAGCGGCTTTGCAGAAGCCCGACGAAGAGGACGATATGCCGGTGAAGGAAGAGGACCAGAGGTCGTTGTCGGTCGGAATTATTGGAGCTCCCAATGCCGGAAAATCTTCACTGACCAATCACGTGGTTGGGACAAAGGTTGCTGCTGTTTCACGGAAGACAAACACTACTACTCATGAAGTGTTAGGAGTAATGACCAAGGGGAACACCCAAATTTGTTTCTTTGATACCCCAGGACTTATGTTAAAGAGCAGTGGATACCCTTATAGTGATATGAGGGCTCGTGTGGAAAGTGCTTGGAGTTCAGTTGGTCTCTATGATGTACTCATAGTAATCTTTGATGTTCATCGGCATCTTAGCAGGCCTGATTCAAGGGTGGTAAGATTGATTGAAAGAATGGGAGCACAAGCACACCCAAAACAGAAGCGGGTGTTGTGTATGAATAAGGTTGATTTGGTTGAAAAGAAGAAAGATTTGTTGAAGGTTGCTGATGAATTCAAAGATCTTCCTGGGTATGAAAGGTATTTCATGATCTCAGGATTAAAGGGTTCTGGAGTAAAAGACCTTACTCAATTTTTGATGGAGCAGGCATTTAAAAGGCCTTGGGATGAAGATCCATTCACCATGAGTGAAGAAGTTATGAAGAATATATCATTAGAAGTTGTCAGAGAAAGGTTGTTAGATCACGTGCATCAGGAAATTCCATATGGTATAGACCATCGCTTGATAGACTGGAAGGAGTTAAGAGATGGTTCTCTTAGGATTGAACAACATTTGATCACTCCCAAACAGAGCCAGCGCAAGATTCTTGTGGGAAAGAAAGGCTCTAAAATAGGGAGAATTGGCATTGAAGCTAATGAAGAGCTTCGGTCCATTTTCAAGAGGGATGTGCATCTCATCCTCCAGGTCAGAGTTAAATGA 1272 46.23 MKALRGLRALTTLSSKTQKPHLTSNLLYRFYAAQPQQQDHSTTTNSLEDHEDDDAVFDSSQFALPNMGTSPVPDQPTWDREYRAKADRTIFGEETQKQKSEEDERKRRAIVLAKALLEAALQKPDEEDDMPVKEEDQRSLSVGIIGAPNAGKSSLTNHVVGTKVAAVSRKTNTTTHEVLGVMTKGNTQICFFDTPGLMLKSSGYPYSDMRARVESAWSSVGLYDVLIVIFDVHRHLSRPDSRVVRLIERMGAQAHPKQKRVLCMNKVDLVEKKKDLLKVADEFKDLPGYERYFMISGLKGSGVKDLTQFLMEQAFKRPWDEDPFTMSEEVMKNISLEVVRERLLDHVHQEIPYGIDHRLIDWKELRDGSLRIEQHLITPKQSQRKILVGKKGSKIGRIGIEANEELRSIFKRDVHLILQVRVK* 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1063041 1070438 - Vvi1g106 Vvi1g106 769306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g106 423 PANTHER GTPASE ERA 33 423 IPR005662 GO:0003723|GO:0005525
Vvi1g106 423 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 327 423 IPR009019 GO:0003723
Vvi1g106 423 Gene3D - 327 423 IPR015946 -
Vvi1g106 423 TIGRFAM era: GTP-binding protein Era 141 421 IPR005662 GO:0003723|GO:0005525
Vvi1g106 423 PANTHER GTPASE ERA, MITOCHONDRIAL 33 423 - -
Vvi1g106 423 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 138 318 IPR030388 GO:0005525
Vvi1g106 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 323 IPR027417 -
Vvi1g106 423 Hamap GTPase Era [era]. 137 423 IPR005662 GO:0003723|GO:0005525
Vvi1g106 423 Pfam KH domain 350 423 IPR004044 GO:0003723
Vvi1g106 423 Pfam 50S ribosome-binding GTPase 142 266 IPR006073 GO:0005525
Vvi1g106 423 ProSiteProfiles Type-2 KH domain profile. 347 423 IPR004044 GO:0003723
Vvi1g106 423 TIGRFAM small_GTP: small GTP-binding protein domain 141 310 IPR005225 GO:0005525
Vvi1g106 423 CDD Era 137 314 IPR030388 GO:0005525
Vvi1g106 423 Gene3D - 134 322 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g106 K03595 - vvi:100244086 813.527