Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1169 ATGGCCGACCTAAACCCTAACCATTCTTCTTCTATTTATCCAAATACCGGCTTCTGCTCCAAAACCATGATCTACCACAGCCTCCGCCCCCACCCTCCCCTCCCCCCGGAAACCGCTCCTCTCTCCCTCTCCGACTACGTTTTTTCCCACCTTTCTACCTCCTCCGCGCCAGAAACCGCCGTCGCCTTCATCGACGCCACCACCGGCCGCAGCATTTCCTTTTCACAGCTTGTCCGCTTCTCCGAAACCCTAGCCGCCTCGCTCCAACGCCGGCTTGGCCTCACCAGAGGCGACTCTGCCTTGGTCATCTCCCCAAATTCGCTTCATGTGCCGGTTCTCTACTTCGCTCTCTTCTCCCTCGGCGTCATCGTCTCTCCTTCGAATCCGGCGAGTACTGAGTCCGAGATTTCCCGCCAAATCGAGCTATGCAAGCCGGTCATTGCCTTCGCGACTTCTTCTACCGCTCACAAGGTTCCATCCCTGAAATTCTCGACCGTGGTTCTCGACTCGCCGGAGTTTCACTCGATGATGACAGTTGAGACTGGGAATCTCCGCCGAGTTCGCGTTTCGCAGTCCGATCCTGCAATGATTCTTTACTCTTCGGGGACAACGGGGCGGGTGAAGGGCGTGGTTCTGACTCACCGGAACTGGATATCCGCGGTGGCGGGAGCGAATGTGCTTCGACAAGAGAGGGCGTCGCCGACGGTGACGATGTGTACGGTACCTTACTTTCATGTGTACGGATGTGGACTTTGTATGAGGGCGGTGGCGTTAGGGCAGAGCGTGGTAGCGATAGAGAGATTGAATGTGCGGTCGTTGATGTCGGCTGTTCAGGAGTTTAGGGTTACGCACTTGGCTGTGGCGCCGCCGGTGATTGTGATGATGGCAAACGGCGGCGATTTAGTGGACGGTTGTGATTTGAGGTCATTGGAAGCGGTGCTCTGTGGCGGAGCTCCGGTTAGTACGGCGGTGATCGAGAGGTTCAAGAAGCGGTTTCCGAACGTGCTGGTGACGCAGGCCTATGGGTTGACTGAAACAACAGGGGGAATCTCTAGAACAGTAGGTCTGGAAGAAAGCCAAAGACTAGGCGCATCAGGGCGTCTTATCCCATATTGCCAAGCTAAGATTGTTGATCCTGATACTGGCATTGCATTGCCTCCCTTGAGGACAGGGGAGCTTTGGGTTAGAGGTCCATCCATTATGAAGGGTTATGTTGGCAATGAAGAAGCAACAGCTGAAATTCTGGATTCTGAGGGATGGTTAAGAACAGGAGATATTTGTCATTTTGACAGAGACGGCTTCATATATGTTGTGGATAGGATTAAGGAATTGATCAAATACAAAGGCTACCAGGTTGCCCCTGCAGAGTTGGAACATCTGCTTCACTCGCATCCGGATACTGTAGAAGCAGCTGTGATTCCGTACCCTGATGCGCAAGCTGGTCAAGTACCCATGGCATTTGTGGTGAAGCGCCCCCAAAGCACCATTGATGAATCAGAAATCATGGATTTCATTGCCAAACAGGTGGCCCCATACAAGAAAATTAGACGGGTATCCTTCATTAATTCAATTCCGAAGAATGCTACTGGTAAGGTGTTGAGAAAGGACTTAATCAAGCTTGCATCATCAAGAAGTGGCTGTTCCAAGTTATGA 1653 52.39 MADLNPNHSSSIYPNTGFCSKTMIYHSLRPHPPLPPETAPLSLSDYVFSHLSTSSAPETAVAFIDATTGRSISFSQLVRFSETLAASLQRRLGLTRGDSALVISPNSLHVPVLYFALFSLGVIVSPSNPASTESEISRQIELCKPVIAFATSSTAHKVPSLKFSTVVLDSPEFHSMMTVETGNLRRVRVSQSDPAMILYSSGTTGRVKGVVLTHRNWISAVAGANVLRQERASPTVTMCTVPYFHVYGCGLCMRAVALGQSVVAIERLNVRSLMSAVQEFRVTHLAVAPPVIVMMANGGDLVDGCDLRSLEAVLCGGAPVSTAVIERFKKRFPNVLVTQAYGLTETTGGISRTVGLEESQRLGASGRLIPYCQAKIVDPDTGIALPPLRTGELWVRGPSIMKGYVGNEEATAEILDSEGWLRTGDICHFDRDGFIYVVDRIKELIKYKGYQVAPAELEHLLHSHPDTVEAAVIPYPDAQAGQVPMAFVVKRPQSTIDESEIMDFIAKQVAPYKKIRRVSFINSIPKNATGKVLRKDLIKLASSRSGCSKL* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19768991 19771314 + Vvi1g1169 Vvi1g1169 770369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1169 550 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 14 542 - -
Vvi1g1169 550 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Vvi1g1169 550 Gene3D - 24 442 IPR042099 -
Vvi1g1169 550 Pfam AMP-binding enzyme 59 447 IPR000873 -
Vvi1g1169 550 Gene3D - 443 545 IPR045851 -
Vvi1g1169 550 SUPERFAMILY Acetyl-CoA synthetase-like 27 542 - -
Vvi1g1169 550 CDD 4CL 35 537 - -
Vvi1g1169 550 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Vvi1g1169 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 542 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1169 Vvi14g1210 ECH
Vvi1g1169 Vvi17g149 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1169 - - vvi:100266547 1071.23