Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1270 ATGTCTGGCTTTGATTTTAACGATCTTTTAAAAGAAGCTCAAATCCGTTGGCTAAAGCCTGCTGAAGTGCTCTTTATTTTACAGAATTATGAGAAGCATCAGCTTACTCAAGAGCCTCCTCAGAAACCAACTAGTGGTTCTCTGTTTCTTTTTAATAAGAGAGTCCTTCGTTTTTTCCGTAAAGATGGTCATAGTTGGCGTAAGAAGAAGGATGGGAGGACTGTTGGGGAAGCACATGAGCGTCTCAAGGTTGGAACTGTTGAAACTATAAATTGTTATTATGCACATGGAGAACAGAATCCCAGTTTTCAAAGGCGTAGCTATTGGATGCTGGATCCGGCATATGAGCACATTGTTCTAGTTCATTATAGAGAGATAAGTGAGGGAAGGCACAGTCCTGGATCCAATTCACTGTTGTCATCAGGATCCACTCAAACTCAGAGTCCCAGCTCTTATAATTCTCAAATTCCAGGCTCTACGTCTGCAGTTAGTGAATTATATGATTCACCCCAAAATGTTTGCAGTCCAGGGTCTGTAGAAGTTAGTTCTGAGGTAGTAATGAAGAGTAATGTCAGAGAACACTTGGACCGGATAAATGGCATAGGAGATTTTGGTAATTCATCTGAGCTTGAGGTTAGTCAAGCATTGCGAAGGCTTGAGGAGCAGTTAAGTTTGAATGATGACAGCTTGGAAGCAATTGATGCATTTCAGAGTCAGAATGAGAATATGAATGGCTTGGAAACTCTAGAATATGAAAGGAAGATGTCTAAACAGGATCAGCATGCAGTTTTACTTAGTGGACCAGAATATACTGTACATGATCAACATTACACTGGATATGCTGGTTGTAGTACAGATGATCTTATGCTGCCACAAGATGCAGGTGACAACAGGGAACATTATCATCATCAATCTACAGTTGAAGGGAGAGACACCTTATCATGGGAAGAGATAATGGAGTTCTGCAAGAGTTCATCCGGTGTGGACTCAAAAGAGAAACACAAATCTTATGGAAATGAAAGACCACTTTCTTCTTCAGGGAGGGGAGCAGCTGAGAAGCAGCAAAACTCTCATTGGCTAAATGTTGATGGGACTAATTCTGAAAGTTCTTCTATATTGTTACCTTCAGAAGTTGAAAATTTGAACTTTCCTGAATATAAGACAAATACTCATGCTGTCAACTCAGACTACTACAGAATGTTGTTTGACGAAGGTCAGATTGAAGTGCCTCTAGAATCAGGTCCAAGTTTGACTCTTGCACAAAAACAGCGATTTACGATCTGTGAAATATCACCAGAATGGGGTTTTTCCAGTGAGACTACAAAGGTAATCATTGCAGGGTCTTTTCTCTGTCATCCATCAGAGTGTGCATGGACTTGTATGTTTGGTGACATTGAAGTTCCTGTTCAGATCATTCAGGAAGGTGTCATCTGTTGCCAGGCTCCTCCTCACCCTCCTGGAAAGGTCACTCTCTGCATTACTTCTGGAAATCGAGAGTCCTGCAGTGAGGTTAGAGAGTTTGAGTACCATGCTAAGACAAGTAGTTGTACTCACTGTAATTTATCCCAAACAGAAGCAACTAAGAGTCCAGAAGAACTGTTGTTACTTGCCAGATTTGTGCAGATGCTTCTGTTTGATCCATTGATGCACAGAAGAGATGGTATTGAATCTGGAATTGATCTATTGATAAAATCAAAAGCTGATGAAGATTCATGGGATTGTATTATAGAGGCACTTTTATTTGGCAGTGGGACTTCATCTAGTACTGTGGATTGGCTTCTGCAAGAGCTTCTGAAAGACAAGTTGCATCAGTGGCTTTCTTCCCGATCCCGGGAAGGATGCGAGTCATTTGGATGTTCCTTGTCCAAAAAAGAGCAAGGGATGATACACATGATTGCTGGGTTAGGCTTTGAGTGGGCCTTAAACCCAATTCTTAACACTGGAGTCAGCATAAATTTCCGTGACATTAATGGGTGGACTGCCCTTCATTGGGCAGCACGTTTTGGAAGGGAAAAAATGGTTGCTGCACTTATAGCTTCCGGTGCATCAGCTGGGGCAGTGACAGATCCCAGTCCACAAGATCCCACTGGTAAAACTGCAGCATCCATTGCTTCCACAAGCGGGCATAAGGGACTTGCTGGTTATCTTTCTGAGGTGGCAGTAACTAGTCATCTGTCATCCCTCACTCTGGAAGAAAGTGAGCTTTCAAAAGGGTCTGCTGAGGTGGAAGCAGAAATTACTGTAAATAATATCTCAAAAGGGGGCCTTGCTGCTAGTGAGGATCAGATTCCGCTTAAAGATGCCTTGGCTGCAGTTCGGAATACAACTCAGGCAGCTGCACGCATACAAGCTGCTTTCCGCGCACATTCTTTCAGGCAGAAGCAGCAGAGAGAAGCTGATGCTCCTTATGTAGATGAGTATGGTATCAGTTCAGATGACATTCAGGAACTTTCAGCAATGTCAAAGCTGGCCTTTCGCAATTCAGCTGCTTTATCTATCCAGAAAAAATATCGAGGTTGGAAAGGTCGTAAGGATTTCCTAACACTACGTCAGAAAGTTGTAAAGATACAGGCTCATGTGAGAGGATATCACGTTAGGAAGAATTACAAGGTGATCTGTTGGGCTGTTGGCATTCTAGACAAGGTTATACTGCGGTGGCGCCGAAGAGGAGCTGGTTTGCGAGGTTTTCGGCCTGAATCAGAGCCCATTGATGAAAATGAGGATGAAGACATTCGTAAGGCGTTCCGCAGGCAGAAAGTGGATGGAGCCATTAATGAGGCTGTATCAAGGGTGCTGTCCATGGTGGAGTCTCCCGAAGCACGTGAACAATATCACCGCGTGCTTGAAAGATTCCATCAAGCTAAGCAATCACATTTCAGACATGATTCAGCATTTGAGGCGGATTAG 2907 43.1 MSGFDFNDLLKEAQIRWLKPAEVLFILQNYEKHQLTQEPPQKPTSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGTVETINCYYAHGEQNPSFQRRSYWMLDPAYEHIVLVHYREISEGRHSPGSNSLLSSGSTQTQSPSSYNSQIPGSTSAVSELYDSPQNVCSPGSVEVSSEVVMKSNVREHLDRINGIGDFGNSSELEVSQALRRLEEQLSLNDDSLEAIDAFQSQNENMNGLETLEYERKMSKQDQHAVLLSGPEYTVHDQHYTGYAGCSTDDLMLPQDAGDNREHYHHQSTVEGRDTLSWEEIMEFCKSSSGVDSKEKHKSYGNERPLSSSGRGAAEKQQNSHWLNVDGTNSESSSILLPSEVENLNFPEYKTNTHAVNSDYYRMLFDEGQIEVPLESGPSLTLAQKQRFTICEISPEWGFSSETTKVIIAGSFLCHPSECAWTCMFGDIEVPVQIIQEGVICCQAPPHPPGKVTLCITSGNRESCSEVREFEYHAKTSSCTHCNLSQTEATKSPEELLLLARFVQMLLFDPLMHRRDGIESGIDLLIKSKADEDSWDCIIEALLFGSGTSSSTVDWLLQELLKDKLHQWLSSRSREGCESFGCSLSKKEQGMIHMIAGLGFEWALNPILNTGVSINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSPQDPTGKTAASIASTSGHKGLAGYLSEVAVTSHLSSLTLEESELSKGSAEVEAEITVNNISKGGLAASEDQIPLKDALAAVRNTTQAAARIQAAFRAHSFRQKQQREADAPYVDEYGISSDDIQELSAMSKLAFRNSAALSIQKKYRGWKGRKDFLTLRQKVVKIQAHVRGYHVRKNYKVICWAVGILDKVILRWRRRGAGLRGFRPESEPIDENEDEDIRKAFRRQKVDGAINEAVSRVLSMVESPEAREQYHRVLERFHQAKQSHFRHDSAFEAD* 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21202169 21215480 - Vvi1g1270 Vvi1g1270 770470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1270 968 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 959 - -
Vvi1g1270 968 MobiDBLite consensus disorder prediction 684 703 - -
Vvi1g1270 968 Gene3D - 826 873 - -
Vvi1g1270 968 ProSiteProfiles Ankyrin repeat region circular profile. 657 683 - -
Vvi1g1270 968 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 959 - -
Vvi1g1270 968 Pfam IPT/TIG domain 427 509 IPR002909 -
Vvi1g1270 968 ProSiteProfiles IQ motif profile. 826 855 IPR000048 GO:0005515
Vvi1g1270 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 877 IPR027417 -
Vvi1g1270 968 SMART CG_1_2 9 127 IPR005559 GO:0003677
Vvi1g1270 968 SMART ANK_2a 657 686 IPR002110 GO:0005515
Vvi1g1270 968 MobiDBLite consensus disorder prediction 131 178 - -
Vvi1g1270 968 ProSiteProfiles IQ motif profile. 849 873 IPR000048 GO:0005515
Vvi1g1270 968 SUPERFAMILY E set domains 426 509 IPR014756 -
Vvi1g1270 968 ProSiteProfiles IQ motif profile. 775 801 IPR000048 GO:0005515
Vvi1g1270 968 MobiDBLite consensus disorder prediction 686 703 - -
Vvi1g1270 968 MobiDBLite consensus disorder prediction 326 364 - -
Vvi1g1270 968 SMART iq_5 848 870 IPR000048 GO:0005515
Vvi1g1270 968 SMART iq_5 774 796 IPR000048 GO:0005515
Vvi1g1270 968 SMART iq_5 825 847 IPR000048 GO:0005515
Vvi1g1270 968 Pfam IQ calmodulin-binding motif 851 870 IPR000048 GO:0005515
Vvi1g1270 968 Pfam IQ calmodulin-binding motif 828 846 IPR000048 GO:0005515
Vvi1g1270 968 MobiDBLite consensus disorder prediction 340 364 - -
Vvi1g1270 968 Pfam CG-1 domain 12 125 IPR005559 GO:0003677
Vvi1g1270 968 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515
Vvi1g1270 968 ProSiteProfiles CG-1 DNA-binding domain profile. 6 132 IPR005559 GO:0003677
Vvi1g1270 968 CDD IPT 426 510 - -
Vvi1g1270 968 Gene3D - 539 722 IPR036770 -
Vvi1g1270 968 Gene3D Immunoglobulins 420 515 IPR013783 -
Vvi1g1270 968 SUPERFAMILY Ankyrin repeat 626 719 IPR036770 -
Vvi1g1270 968 Pfam Ankyrin repeats (3 copies) 644 717 IPR002110 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14474 PF03859 CG-1 1.20E-48 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1270 K21596 - vvi:100260828 1853.18