Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1375 ATGGGTACTCTGAATTTGACTGTACAGGTTCTTGACATCTCTCCCAAGGTCACCCTCTCAGACTTGAATATCTTTTTCTCTTACTGTGGAACTGTTGACAACATCCAGCTCTGCAGAAAAAATGACCAGACACAGTTGGCTTTTGTGACATTCAAGCAGCCTTATGCCTTTCAAACTGCACTTCTCCTAAATGGAGCTGTTATTGGAGATAGTCCAATTCGCATACTGGCCTTACAGAATTTGGCAATTCATCCCATCCCAGACAAAAGGAATTGCAAAACCCAGAATAAGGAGAAGCAAGGAATCTTTCCAGTAGTGAACTCTGCTATACAAGGCATAGCTTCAAAAAGTATGGAGATGTTTAACAAGACTGCTGATGAGTTGGAGGAGAATTGCAAGCTTTCAGAGAAGGGCAGAGCACTAATGCACCAGACAAGATTGGCAATCTGTGCTGCTGAGAAGGGGGCAGGTCAACTTGGCACAGCTATCATGAATAACGAGTATGTTTCAAATGGCTCCATTTGGTTGTCTGGTGTGACCCCGGTTGATAGGGATGGAAATGGGAATCCTGAGTGGAACCACCAGCTGCAGTTTGATCTCAGGGACATCTCACTTGCTGATTCTGCTAATTACTACGTCAAATTCAGTCTCCGCTGCGAGGGTATCGTCTTTGGGAACAAAACTATTGGTGAAGTTTGTGTTCCATTGAAGGAACTGATCGATGAGTTCAACAGAGCTGTCAGGTTTGTAAGCTATCAGGTCAGGACTACTGATGGAAAACCCAATGGCGTACTGAATTTTTCTTATAAACTGAACATAAAAGGAAGTGATTTACCAGCAGTTGAGGCACCAGAGGATGAACATCTTCCTTACCCCTCAGTGGAAGTTGAGGAGTTTCATGCTCCTAAAAAGGATAGTTGCTACCCTTCAGTGGATGTTTCTACCTTGCCAGCAATTACTCTCCAGTATTTGCTTCATGTCAAACACTGCTCCCACAATATCAGATATCTCCTCTTGAGTTCCAGCTCTTCTTTCATATTTAGTTTCTCATTGTATTTGATATATATAGTTGTAACTTACAAGGTCGGTGGCGAACATGAAGAACGGGGCTTCAGTGGTGTTGAAACAGATCATTGCACTGCTGACTTCCATTGCGAAAACAAAATCCATGGCGGTCAAGAGCAAAACAAGTGCCTTGAAGTCTCGCATACTGATGTTCTCATTCTTGAGGACCCAAGCCGCATGTATCAGGTGGTGGAGAGAGCAGAGGATGACGATGACAACGGCATTAATAATGATGACGATGGAAAGTACCCAGATCTTACTCACTGTCTGTTTGAAGAGGAGGAGGTGGACATGAGGGGTGGATCCATTATAGATATGGTGAAGAATGGGAAGGAGGAGGGAGAGGAATTCAGATTGGAAGATGAGATTGATCATGTGGCTGACTTGTTTATAACGAGGTTCCATAAACAGATGCGCATGCAGAAGCTGGAGTCTTTCAAAAGATATCAAGAGATGCTCCAGAGAGGTGTCTAG 1539 43.73 MGTLNLTVQVLDISPKVTLSDLNIFFSYCGTVDNIQLCRKNDQTQLAFVTFKQPYAFQTALLLNGAVIGDSPIRILALQNLAIHPIPDKRNCKTQNKEKQGIFPVVNSAIQGIASKSMEMFNKTADELEENCKLSEKGRALMHQTRLAICAAEKGAGQLGTAIMNNEYVSNGSIWLSGVTPVDRDGNGNPEWNHQLQFDLRDISLADSANYYVKFSLRCEGIVFGNKTIGEVCVPLKELIDEFNRAVRFVSYQVRTTDGKPNGVLNFSYKLNIKGSDLPAVEAPEDEHLPYPSVEVEEFHAPKKDSCYPSVDVSTLPAITLQYLLHVKHCSHNIRYLLLSSSSSFIFSFSLYLIYIVVTYKVGGEHEERGFSGVETDHCTADFHCENKIHGGQEQNKCLEVSHTDVLILEDPSRMYQVVERAEDDDDNGINNDDDGKYPDLTHCLFEEEEVDMRGGSIIDMVKNGKEEGEEFRLEDEIDHVADLFITRFHKQMRMQKLESFKRYQEMLQRGV* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22748078 22755774 + Vvi1g1375 Vvi1g1375 770575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1375 512 Gene3D C2 domain 168 272 IPR035892 -
Vvi1g1375 512 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 180 - -
Vvi1g1375 512 Pfam C2 domain 186 240 IPR000008 -
Vvi1g1375 512 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 178 270 IPR035892 -
Vvi1g1375 512 SMART rrm1_1 7 76 IPR000504 GO:0003723
Vvi1g1375 512 Pfam Cotton fibre expressed protein 475 510 IPR008480 -
Vvi1g1375 512 CDD C2_SRC2_like 180 267 IPR044750 GO:0006952
Vvi1g1375 512 PANTHER PROTEIN VIP1-LIKE 1 180 - -
Vvi1g1375 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Vvi1g1375 512 SUPERFAMILY RNA-binding domain, RBD 6 79 IPR035979 GO:0003676
Vvi1g1375 512 Gene3D - 4 76 IPR012677 -
Vvi1g1375 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g1375 Vvi14g1059 ECH
Vvi1g1375 Vvi14g1061 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1375 - - vvi:104880947 358.221