Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g344 ATGTTCTTCAAGTCATCCTCCCCTCCATTTATAATTTCAACCATTTTTGCTTTATTATTAGTCATAGAAAAATCACTATGCGTGGATCCATACTTCAAGACCTGCAGCCTGAGCAGAACCTGCGGTGGTTTAAATATAGGCTTCCCATTTTATATTGAAGGCCTGCAAGACCCTCTCTGTGGCTACCTTGGGTTCAACGTTTCCTGCCTCCATAACACTACAATTCTCACCATATCCGAGAACCCTTACATCATCCACCAAATTTTCTACCAAAACCAGACTCTTCGAGTCTCAAACGCCTTAGGAAATGGCTGCCTTCCTTTGGGTCGCGACCTACTCCTTCCCAATGAAGAATTTGAGCTCTCTCATCCTGATGGCACCGACTTCTTTTTCTTTCTATCCAATTGTTCAGCTCCATTGCCTGATAATCTAGTACGCTACAAGATCAATTGTTCTGGCGACGATGGAGCAAGTCCGGTTCTGGCAATGTCTAAGGGAGATTCAAACTGGGTTCTGGCGTCCGAGAAGTGCGGAAGAGAGGTAAAAGCACCTTTTGAAGAGAAGGCAGATGATGGGAGTAATGAAATTGGGGAGGAATTGGTGAGAAGAGGGTTCATGCTGAAATGGAGAGCGAGCGACTGTAGCAAGTGCGAGGAGAGTGGTGGCAAGTGTGGATTCAATATCACTGACTACCATTTCAAGTGTTTCTGCCGCGATCGTGCTCATGCTAAGTACTGTGTTTCTAGGAATGACAAGGGCATGAAGTTAAGAGTTGCTCCAGCTGTTGGCATTGGGGTTCTGTTAGCAGTAGTTTTCTTCTTCTGCTTTTGGAGGAATTGCAAATCAATCAAACGAACAAAGAACCAACCAAATATTGAGGCCTTCTTAAGAAACCATGGATCCCTGGCTCTGAAAAGATATCGTCATTCCGATGTTAAAAAGATGACCAACTCATTCAAAGATAAAATCGGTGAAGGAGGATATGGTGATGTTTACAAAGGAAAGCTGCTTGATGGCCAAATGGTAGCAGTGAAGGTCTTGAATGAAACTAAAGGTAATGGAGAAGAATTTATCAATGAGGTTGCAAGCATCACCAGGACTTCCCACATCAATATTGTCAGTCTCCGGGGCTTTTGCTTTGAGGGTCCAAAAAGAGCTTTGATTTATGAGTTTATGCCAAATGGATCTCTTGAGAAGTACATATGTAATGGACACCATTCAAAGACAAATTGCCAATTGGGATGGGAAACATTGTATAAAATTGCAGTTGGCATAGCCCGAGGATTAGAGTACTTGCACCGTGGTTGTAATACACGAATTCTGCATTTTGACATAAAGCCTCATAACATTCTTCTCAGCGAAGATTTTTGCCCAAAGATCTCTGATTTTGGCCTTGCTAAACTTTGTACCAGGAAAGATAGTATCATATCCATGTTAGGCACAAGAGGGACTCCAGGATATATCGCTCCCGAGGTATTTTCTAGAGCTTTTGGTGGGGTCTCTCACAAGTCCGATGTTTACAGTTATGGAATGATGGTCTTAGATATGGTTGGAGGGAGAAAAGATGTTGATGGTGGAAGTAGTCACACTAGTGAAATATATTTTCCAGATTCCATATACAAGTGCATTGAAGAAGATGAAGATCTCGGACTGCCGGAGATTATGAATGGCGAGAGGGAGTGTACAAGGAAAATGATAATAGTGAGCTTGTGGTGCATACAAACAAGACCCTCAGATCGGCCACCAATGTGTCAAGTGCTGGACATGTTGGGAGGGAGCCTCCAATCGTTGCAAATCCCACCGAAGCCTTACTTGTTTTCTCCTCCAAGATCACTGCAAGATTCATCAACAACAACAGTATCATGA 1866 43.03 MFFKSSSPPFIISTIFALLLVIEKSLCVDPYFKTCSLSRTCGGLNIGFPFYIEGLQDPLCGYLGFNVSCLHNTTILTISENPYIIHQIFYQNQTLRVSNALGNGCLPLGRDLLLPNEEFELSHPDGTDFFFFLSNCSAPLPDNLVRYKINCSGDDGASPVLAMSKGDSNWVLASEKCGREVKAPFEEKADDGSNEIGEELVRRGFMLKWRASDCSKCEESGGKCGFNITDYHFKCFCRDRAHAKYCVSRNDKGMKLRVAPAVGIGVLLAVVFFFCFWRNCKSIKRTKNQPNIEAFLRNHGSLALKRYRHSDVKKMTNSFKDKIGEGGYGDVYKGKLLDGQMVAVKVLNETKGNGEEFINEVASITRTSHINIVSLRGFCFEGPKRALIYEFMPNGSLEKYICNGHHSKTNCQLGWETLYKIAVGIARGLEYLHRGCNTRILHFDIKPHNILLSEDFCPKISDFGLAKLCTRKDSIISMLGTRGTPGYIAPEVFSRAFGGVSHKSDVYSYGMMVLDMVGGRKDVDGGSSHTSEIYFPDSIYKCIEEDEDLGLPEIMNGERECTRKMIIVSLWCIQTRPSDRPPMCQVLDMLGGSLQSLQIPPKPYLFSPPRSLQDSSTTTVS* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3548937 3552245 - Vvi1g344 Vvi1g344 769544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g344 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Vvi1g344 621 Pfam Protein kinase domain 320 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g344 621 Gene3D Phosphorylase Kinase; domain 1 293 391 - -
Vvi1g344 621 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247
Vvi1g344 621 ProSiteProfiles Protein kinase domain profile. 317 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g344 621 SUPERFAMILY Protein kinase-like (PK-like) 301 590 IPR011009 -
Vvi1g344 621 SMART serkin_6 317 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g344 621 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Vvi1g344 621 Gene3D Transferase(Phosphotransferase) domain 1 392 599 - -
Vvi1g344 621 PANTHER - 22 619 - -
Vvi1g344 621 PANTHER RUST RESISTANCE KINASE LR10-RELATED 22 619 IPR045874 GO:0004672
Vvi1g344 621 Pfam Wall-associated receptor kinase C-terminal 165 239 IPR032872 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g344 Vvi17g289 ECH
Vvi1g344 Vvi14g861 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76501 PF00069 Pkinase 1.90E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g344 - - vvi:100247375 1279.62