Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g650 ATGTATTCTTCTTTCCCTTTTACCTTTTATCCCCTCTGTTTACTACTTTTGTGCTTCTTCATACCCCATTCTCTTTCTGATCCAAGAACTACACAAGTGGCCCTTATATGCTCCAACAGAACCGCATTAATGCCTGAGCGTCAAACTTTCATTGCAAATTTCTTAGAAGCTATGGACCAAGTGACTCCATTGATTAGCACCCAGAGATATGCAGACGTTACCAGTGGAACTGGTAGTACCGCAGTTTTTTTGTTTGGTGAATGCATGGAAGATCTTTCTCAGAATGATTGTAATCTTTGTTTTGCCCTCTGCAAAACCCAACTCCTCAGATGCGTCCCATTCCAAAAGTCCACCCGGGGTGGTAGAAGTTTCTATGATGGGTGCTATATAAGGTATGATGATTATAAATTCTTTGATGAGGCTTTGAGTGCTGAAGACAAGACTGTGTGTGGAACTAAGGATTTTAGTGGAGATCAAACTGTTTTCAGAGCTAATGCTATTGAATTGGTGAGGAACTTGAGTGTTGAAGCGCCTGGGAATGATGGGTTCTTCGTTGGCTCTGTGAATCGAAGTAATATATCAGTGTATGGGTTGGCTCAGTGTTGGGAGTTTGTGAAAGGGAGCGCCTGTGCAGAGTGCTTGGCGAATGCCACCTCAAGGATTGGCTTGTGTCCTCCCAAGGAAGAAGGGAGGGTGTTGAATGCTGGGTGTTACTTGAGGTATTCTACCCAAAAGTTCTATGACAATTCCACGAGTGATTTTGTAGAAGAGAATGAAGGAAGCAGCAGACTAGCTATTATTCTGGGTGTAACTTCATCTTCTTTTGCTCTTTTGCTGATCATCGCGATGACCGTTTTCTTTGTGAGGAAGAAACGTGCAAAGAGGAGGAGAGAAAAAAAGCAACTAGGTGATCTGTTGGCCACTGTGAACAAGTCCAAACTCAATTTCTCATATGAAACTCTTGAGAAGGCCACAAACTACTTCCACCATTCCAATAAACTTGGGCAAGGAGGATCTGGTTCTGTATACAAGGGGATTATGCCGGATGGAAAGGTTGTCGCCATAAAGAGGCTTTTCTTCAATTCAAGACAATGGGTTGATCATTTCTTTAATGAAGTCAATTTGATCAGTGGCATTGACCACAAAAATCTTGTAAAGCTATTAGGATGCAGCATTACAGGTCCTGAAAGCCTTCTTGTTTATGAATATGTGCCAAATCAAAGCCTTCACGATTATCTTGTTAAAAGGAATGCTCCACCTCTAGCATGGGAAATGAGGTATAAAATTCTATTGGGTATAGCTGAGGGCTTGGCCTATCTGCATGAGGAATCTATGTTAAGGATCATACACAGAGACATAAAATTAAGCAATGTTCTGCTTGATGAGGACTTTGCAGCAAAGATTGCTGATTTTGGGCTTGCTAGATTATTTCCAGAAGATAAGACTCACATCAGCACTGCCATTGCAGGCACTCTAGGCTACATGGCTCCAGAATATGTGGTTCGGGGAAAATTGACTGAGAAGGTGGACGTCTATGGTTTTGGAGTCCTTGTTATCGAAGTTGTCTGTGGAAAGAGAAACAATTCCTTCACTCAAGATTCATTCTCTATCCTACAAATGGTTTGGAACCTTTATGGAACTGGACGATTGTATGAAGCTGTTGATCCATCGCTTGGGGGTAACTTTCAAGAAGATATGGCATCTAGAGTACTTAAAGTAGGGCTACTCTGTGTTCAAGCCTCTGCAGAACTGCGTCCATCAATGTCATTAGTTGTGAAAATGCTTACTGAAAACCATGAAACTCCTCAGCCAACGCAGCCACCATTTCTACATTCTGGTAATGCAGAATCCAGTCCATTGGTAAAAGCAGAAACTTCCCATTCCCTGCCCGAGTCCGGCACTCAATCTTCCAAGAATAGCATGACACAAAGCTGGATTGAGCCTAGATGA 1950 42.36 MYSSFPFTFYPLCLLLLCFFIPHSLSDPRTTQVALICSNRTALMPERQTFIANFLEAMDQVTPLISTQRYADVTSGTGSTAVFLFGECMEDLSQNDCNLCFALCKTQLLRCVPFQKSTRGGRSFYDGCYIRYDDYKFFDEALSAEDKTVCGTKDFSGDQTVFRANAIELVRNLSVEAPGNDGFFVGSVNRSNISVYGLAQCWEFVKGSACAECLANATSRIGLCPPKEEGRVLNAGCYLRYSTQKFYDNSTSDFVEENEGSSRLAIILGVTSSSFALLLIIAMTVFFVRKKRAKRRREKKQLGDLLATVNKSKLNFSYETLEKATNYFHHSNKLGQGGSGSVYKGIMPDGKVVAIKRLFFNSRQWVDHFFNEVNLISGIDHKNLVKLLGCSITGPESLLVYEYVPNQSLHDYLVKRNAPPLAWEMRYKILLGIAEGLAYLHEESMLRIIHRDIKLSNVLLDEDFAAKIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKVDVYGFGVLVIEVVCGKRNNSFTQDSFSILQMVWNLYGTGRLYEAVDPSLGGNFQEDMASRVLKVGLLCVQASAELRPSMSLVVKMLTENHETPQPTQPPFLHSGNAESSPLVKAETSHSLPESGTQSSKNSMTQSWIEPR* 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7469366 7474277 + Vvi1g650 Vvi1g650 769850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g650 649 SMART serkin_6 328 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g650 649 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 21 637 - -
Vvi1g650 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Vvi1g650 649 Gene3D - 30 137 IPR038408 -
Vvi1g650 649 Gene3D - 145 246 IPR038408 -
Vvi1g650 649 ProSiteProfiles Gnk2-homologous domain profile. 143 246 IPR002902 -
Vvi1g650 649 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 637 - -
Vvi1g650 649 SUPERFAMILY Protein kinase-like (PK-like) 314 613 IPR011009 -
Vvi1g650 649 Pfam Protein kinase domain 328 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g650 649 ProSiteProfiles Protein kinase domain profile. 328 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g650 649 Pfam Salt stress response/antifungal 155 243 IPR002902 -
Vvi1g650 649 Pfam Salt stress response/antifungal 45 135 IPR002902 -
Vvi1g650 649 ProSiteProfiles Gnk2-homologous domain profile. 31 137 IPR002902 -
Vvi1g650 649 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Vvi1g650 649 Gene3D Transferase(Phosphotransferase) domain 1 404 607 - -
Vvi1g650 649 MobiDBLite consensus disorder prediction 599 649 - -
Vvi1g650 649 Gene3D Phosphorylase Kinase; domain 1 287 403 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g650 Vvi17g778 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76513 PF00069 Pkinase 1.50E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g650 - - vvi:100253407 1273.07