Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g71 ATGGAGAATTTGCTCAAGCAAATCAGGGCGAGATTTCCTGGTGCAGGGGAAGGAAACAAAGAAGCAGGCAGCAGTAGAGAGCGAAAAATTCCACTCCAAAGAACTCAGACTTTCAAAGGAGAAAGGAAGGGCCTGAGCTGGCTCAGTAGACAATTCGCTAGCAGAATGAGCCGGGGTCATGATTTGGAGAATGATTCTGAGTATGCAACTGCAGTGGCTGCAGCTGCATATGCCGTTCACTCGCTGGAAGAAACCAGAATCCCAGATCAGAAAAAGAAGAGTGAAGGCCCTGAACCTTCTCCAACCAGGGCCATAAGCAAAAAGGAAGGAACTACCTCTGCAGTTCTAGATCCTGGTAGATCATCCAGGCGACTTTCAGGTGAAGCTTCACTCAGAATTTCAGATGGTAAAGAGAGGAGGGCACCAATAAAAACAGCAGAGAAGACGACTCCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCCCCATCAGTACAAAAAACTCCAACAGTAAAGTCTGCTGTTGCTCCTGCTACCTCCATGAAAAAGGCTCCAACAGAGGAGCCTTCTGCTGCTGGCGCTTCATTCAGTAAAAAACCGCTGGACAAGGCGGCCAGCAGAAAACAAGACATTGCAGCGCCAAAACCTACCCCGCCGCCACCGCCACCACCACCCCCACCACCCACCAAAGAGCCTGCAACCCGAAAAGCTCAAGCCACAAGGGGGAGACCGATTGGAGAAATAGAGATAGATGCTTGGGAGAAGGCTGAGATGGCTAAGATCAAGGAAAAGTTTGACAAGGTGAATGGCGAGATTGCCTCCTGGGCTGATAAGAAGAAGAAGAAGGCCAAGCTCAAACTGGATAAAATAGAGGGGGCATTGGATCAGAAAAGAGCGAAAGCCCTGCGGCATGATCGGACTGACATAAACATATCTAAACTGCAGGCGGCATTGGATCAGAAAAGAGCGAAAGCCCTGCGGCATTACCGAACTGACATACAAAACATTGATTATGTAGCAGGAGGGGCTAAAGCGCAGGCAGAGGAAAAGCGAAGAAATGAAGAGCTGAAAGTGAAAGAGAAGTCGAAGATCATCAGAGAGACGGGGCAATTCCCCCCGACATGCCTCTGTTTCTGA 1134 50.09 MENLLKQIRARFPGAGEGNKEAGSSRERKIPLQRTQTFKGERKGLSWLSRQFASRMSRGHDLENDSEYATAVAAAAYAVHSLEETRIPDQKKKSEGPEPSPTRAISKKEGTTSAVLDPGRSSRRLSGEASLRISDGKERRAPIKTAEKTTPPPPPPPPPPPPSVQKTPTVKSAVAPATSMKKAPTEEPSAAGASFSKKPLDKAASRKQDIAAPKPTPPPPPPPPPPPTKEPATRKAQATRGRPIGEIEIDAWEKAEMAKIKEKFDKVNGEIASWADKKKKKAKLKLDKIEGALDQKRAKALRHDRTDINISKLQAALDQKRAKALRHYRTDIQNIDYVAGGAKAQAEEKRRNEELKVKEKSKIIRETGQFPPTCLCF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 726649 729085 + Vvi1g71 Vvi1g71 769271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g71 377 MobiDBLite consensus disorder prediction 105 119 - -
Vvi1g71 377 Coils Coil 343 363 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 130 145 - -
Vvi1g71 377 SUPERFAMILY Formin homology 2 domain (FH2 domain) 217 324 - -
Vvi1g71 377 Coils Coil 279 299 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 21 36 - -
Vvi1g71 377 Pfam Remorin, C-terminal region 247 303 IPR005516 -
Vvi1g71 377 Pfam Remorin, C-terminal region 309 371 IPR005516 -
Vvi1g71 377 MobiDBLite consensus disorder prediction 84 98 - -
Vvi1g71 377 PRINTS Proline rich extensin signature 149 161 - -
Vvi1g71 377 PRINTS Proline rich extensin signature 163 184 - -
Vvi1g71 377 PRINTS Proline rich extensin signature 184 200 - -
Vvi1g71 377 PRINTS Proline rich extensin signature 214 231 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 147 166 - -
Vvi1g71 377 PANTHER OS02G0116800 PROTEIN 310 376 - -
Vvi1g71 377 PANTHER OS02G0116800 PROTEIN 3 309 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 1 41 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 83 247 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 212 231 - -
Vvi1g71 377 PANTHER REMORIN FAMILY PROTEIN 310 376 - -
Vvi1g71 377 PANTHER REMORIN FAMILY PROTEIN 3 309 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g71 - - vri:117923525 634.409