Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g806 ATGTCTCGTTCCTGCTCTCAGTGCGGAAATAATGGCCACAACTCCCGCACCTGCACGGAGTCCGGTGGTGCCGGCGCTGCGGCCAACGACATCATGCTCTTCGGCGTCCGTATCACGGAAGGCGCGTTTAGGAAGAGTGCTAGTATGACTAATCTCTCTCAATACGAACAGCCTCAGGACTCCAACGCCGATGCTGGCTATGCCTCCGATGACGTTGTTCACGCCTCCGCCAGGAGTCGTGAGCGCAAGAGAGGAGTCCCTTGGACTGAGGAAGAACACAGGCTTTTCTTGCTAGGTTTGCAGAAGGTAGGTAAAGGAGACTGGAGAGGAATCTCTAGAAACTTCGTCAAGACACGGACTCCTACTCAGGTGGCTAGCCATGCTCAGAAGTACTTTCTCCGGCGGAACAATCATAATAGGAGACGTCGTAGATCTAGTCTCTTCGACATCACCGCCGATACGTTTATGGGCTCTACAATATTGGAGGAAGATCAGGTCCACCAAGAGACCGTCTCTCCGCCTCAGTTACATTCACATCTAAATGGCAGTGCCGGAGGATTTCCGGTACCAACATTTCCGGTGACGATGGCTCCGGTAGTTTTACCAGTGGCTAGCAATGGCTCGATGGAGATTCTGACGCTAGGGCAAAGCAATCAAGCAAAGGGGCCGACCAAGCTCATCCGTCCCATACCGATTCTTCCAGTTCCACCATCTTCAAAAATGGCAGATCTGAATTTGAACATTCCATCCACGGCGGATCCCTTGCCTCTGTCACTGAAGCCGTCCTCGTCAACCTCCACAAGTCCGCAGTCACCTACGGCGACGAGGCACTCCTCAGCTTTTCAGGCTATGTCGGAGAGCTTCAACAGTAGTACTGGCGACAACATCATTAGTGTCGCGTAA 903 52.82 MSRSCSQCGNNGHNSRTCTESGGAGAAANDIMLFGVRITEGAFRKSASMTNLSQYEQPQDSNADAGYASDDVVHASARSRERKRGVPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNHNRRRRRSSLFDITADTFMGSTILEEDQVHQETVSPPQLHSHLNGSAGGFPVPTFPVTMAPVVLPVASNGSMEILTLGQSNQAKGPTKLIRPIPILPVPPSSKMADLNLNIPSTADPLPLSLKPSSSTSTSPQSPTATRHSSAFQAMSESFNSSTGDNIISVA* 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10009735 10011362 + Vvi1g806 Vvi1g806 770006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g806 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 136 IPR017930 -
Vvi1g806 300 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 83 134 IPR006447 GO:0003677
Vvi1g806 300 PANTHER TRANSCRIPTION FACTOR KUA1 7 293 - -
Vvi1g806 300 ProSiteProfiles SANT domain profile. 83 136 IPR017884 -
Vvi1g806 300 Gene3D - 86 137 - -
Vvi1g806 300 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
Vvi1g806 300 Pfam Myb-like DNA-binding domain 87 132 IPR001005 -
Vvi1g806 300 CDD SANT 87 132 IPR001005 -
Vvi1g806 300 MobiDBLite consensus disorder prediction 256 300 - -
Vvi1g806 300 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g806 300 SMART sant 84 134 IPR001005 -
Vvi1g806 300 MobiDBLite consensus disorder prediction 253 300 - -
Vvi1g806 300 SUPERFAMILY Homeodomain-like 82 137 IPR009057 -
Vvi1g806 300 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 7 293 - -
Vvi1g806 300 MobiDBLite consensus disorder prediction 1 22 - -
Vvi1g806 300 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g806 Vvi17g672 ECH
Vvi1g806 Vvi17g619 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14535 PF00249 Myb_DNA-binding 9.00E-11 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g806 - - vvi:100253576 546.199