Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g85 ATGTTTTTACATCAATCATATCCAATATCTATCAACGAGTGGATATTCATACTCATAGTATTGTTGCAGCAATTTGTAGATTTGAGAGAAAAGAGAGAGATCATGGTCGGCCTAGAAACAGAAATAGCTGGGGCGCTTGTAGAGGGTTCTGTGACCTTTCTTCTGCAAAAAATTGATGCTATTGCAACCAGAGAATGGAATTTGAAGCAAATAAATAGGATGAAAGTCCAAGATATAGGACGAGAGCTGGGGAGCATTGAGGCCCTCCTACAAGCTGATTCAAAGGAAGATCCTGATCACCAATACGCAGTCTGGATTCAACAGGTCCGTGATCAAGCTAATGCCATCGAGGATGTTCTTGACCGGGTAAGGCTCGCTGAAGGTTCAGTGTGGTGGGGCTTGAAAATGCGTTACTCCACCGAAGAGTTGATACAGGAGATTAACACGAGTCTGCAAAACATTCAGCGGACAAGGGAGAGGTATCACAGCATGCGCTCCACTTCAACCCATACTGGCTACAGCACATACTTTCCTGTGAGAGCGGCTCCTTTGTTCACTGGCGATGTTGACACTGTGGGCATTGAGGAGCCTAGAAATCAGCTGGTTTCTTGGGCCTTGGAACCGAGGCAGAGGCTTGAGGTGATGTTCGTGGTGGGGATGGCTGGACTGGGGAAGACCACTCTTGTCAACAGTGTGTATGAGAGGGTGAAGCAGCACTTTGATTGCCATGTCTGGATCACTGCTTCAAAGTCCAAAAACAAACTCGATGTCTTATGCACCTTGTTAGTAGAGGGATTTGGGTGTTCAATTACACAGAGGGCCGACAAGGTTGCTCAGGCGCGTAACCTGCGGAAATTTCTCCACAACAAACGGTATGTTATAGTTGTTGATGATTTATGGGAAAAAAATGTGTGGGAGTCCATTAAACTTGTATTGCCAGATGATGGTAACAACAGTAGAATAATTATCACTACAAGGAGAGGCGACATAGCTAATTCTTGCAGAGATGATGATTCTATTCATATCCACAAGCTCCAGCCACTGTCCTGGGAAAATGCTAAGCAGCTCTTCCATACTAAAGCTTTCTCAAAAAACGGCGGATGTCCTTCAGGCTTGGAGGAAATTTCCAAATCCATCTTACACAAATGCGATGGATTGCCACTTGGGATTATTGAGATCGGCAAACTGTTGTCAAGAAAGGCTCAAACTGCATATGAGTGGGACAAGTTACACAATAGCCTTGAATCTGAATTGAGAAGCAGTGGTGGCCTTTCAAATATGATGAGTGCGCTGTCCGCAAGTTACGAGGATTTGCCTTACCATCTCAAGTATTGCTTCTTATACTTGAGCATGTTTCCCGAGAATAAACCAGTTAAGCGAAGAAGACTGATTCGGCTATGGATAGCTGAGGGATTTGTAAGAGAGGAGAGAGGCAAAACTCTTGAAGAGGTTGGGGAAGAGTACCTGAATGAGCTGATTGACAGGAATATGTTGAAGGCAAATGAAATGGATTTTGATGGAAGGCCAAAAAGTATGGGAGTTCATAGTCTCATGCATAAGATGATTCTCCTTGTCTCACATGAGGATAACTTTTGTTCTGTTTGCACAGGAGCAGAAGGGAACTTGACTGAGAAAACCCGGCGCCTATCCATCCAGAAGGAAGGCTTTGATGTGCCTCAGGATGAGCCCTTGCCCTGTGTTCGAACTTTTTTCAGTTTCAGTACAGGTATGGTAAACATTGGTTCGAATTTCGAGCTATTAATGGTTTTGGACATGGAAGGCACTCCTTTGGTAAACTTTCCAAGTGCCATTACAGATCTTGTGCTATTGAGGTATTTGAGTTTGAGGAATACAAATATAAGGAGCATCCCCTGGTCCCTGAGTAAACTACGGCACCTTGAGACCTTGGATCTTAAGCAGACGCTGGTAACAAAGGTACCCAAAACAGTCCTAAAACTTAAGAAACTTCGCCACTTGCTGGTTTATCGCACCAAAGAGGATCGGCGCATTGAAGAACCTACAAAAGCTTTCATTTGTAAAGGCAAGAAGCTAGGCATTCTGGATGCAATGGATCCGCCGCGTCTTCTTCAACGCCTCTATCTCAAAGGGCCCTTGCAAAGGTTTCCAAGGTGGGTTTCTTCTCTACATGACCTGGTGAGAATACGCCTAAAATGGTCTTCACTCACAGAAGACAACCCAATTGCAGCCCTTGAAGATCTCCCAAACTTGATGGAGCTGCAGTTACTTGATGCATACACTGGAGACCAGTTCGATTTCAACAAGGGAAAATTTCAGAAGCTTAAGATATTAGACCTTGAGAGATTGGAACGACTGAAGTTTATCATAATGGAAGATGGCACATTGCCTTGCCTACAAAAGCTGATCATAAGGCATTGCAAGGAGCTGAAGCAGGTTCCCATAGGTATTGACAACCTCAATCATCTCAATGAACTGTTTCTCTGCGATATGCCTGAGAAATTCGTGGCCCAGCTAAGGAAAAAAGTCGGTGAACTTCGCCATCTGCTTCATCGTATTTCGTATATTCTCTGGATTCAAGATGTTCGGGAAGAAGCTTATGACATTGAGGATGTCATTGACCTGCTCAGTCTTGATATGACTCAAGAATCAGCCCGGCGCCGCTGGAAAATGAGACACTCCATCAACGACTTGATAGAGAAGATTAACAGGAGTCTGGAAAACAGTCAGAAGATACAGGAGAGGTATCAGAAGCTGGTCTCCACTCCAACCAATGCTGTCAACAACACATATCCTCATGAGAAACTAGCTTCTTTGTTCCTTGGCAACGTTGACACTGTGGGCATGGAGGAGCCCCGAAATAAGCTCGTTTCTTGGGTGTTGGAGCCGAAGCAGAGACTTAAGATGATGTTCGTGGTGGGGATGGCTGGATTGGGGAAGACGACTCTCGTCCACAGCGTGTATGAGAGGGTGAAGCAGCGCTTTGATTCCCATGTCTGGATCACTGCTTCAGAGTCCAAAACCAAACTCGAAATCTTATTGAGCTTGTTAGCAAAGAAATTTGGCTGTTCAATTACACCGGGGGCAGACATGGTTGCTGTAACTCACGAACTGCAAAAATTTCTCCGCAACAAACGGTATGTTATGGTTATTGATGATTTTTGTGTAAAAGATGTGTGGGAATCCATTAGACTTGCATTACCAGATGGTAACAACAGTAGAATAATTATCACTACAAGGAGAGGCGACATAGCTAATTCTTGCAGAGATGATGATTCTATTCATATCCACAAGCTCCAGCCACTGTCTTGGGAAAATGCTAAGCGGCTCTTCCATACTAAAGCTTTCTCAAGAAATAGCAGATGTCCTTCAGGCTTGGAGGAACTGTCCCAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAGATTGGCAGACTCTTGAAGAGTAAGGCTCAAACTGCATATGAGTGGCAAAAGTTACACGATAACCTTGAATCTGAATTGAGAAGCGGTGGTGGCCTTTCCAATATGATGAAAGTGCTGTCTACAAGTTACAAAGATTTACCTTACCATCTCAAGTGTTGTTTCTTGTACATGGGCATCTTTCCTGAAAATAAACCAGTTAAGCGAAGAAGACTGGTTCGGCTGTGGATAGCTGAGAGATTTGTAACAGAGGAGAGAGGCAAAACTCTTGAAGAGGTTGGGGAAGAGTACCTGAATGAGCTGATTGACAGGAGTCTGATACAGGCAAATGAAATGGATTTTGATGGAAGGCCCAAAAGTGTAGGAGTTCATTGTCTCATGCATAAGATGATTCTCTCACTCTCACATGAGGAGAACTTTTGTACTCTACATTGTACAGGAGCAAAAAAGAACTTTACTGAGAAAACCCGGCGCCTATCTATCCAGAAGAAAGACTTTGATATTTCTCAGGAGTTGCCCCGTCTTCGAACCTTCTTCAGTTTCAGTACAGGTAGGGTAAACATTCGTTGGATTAATTTCCTACGACTGAGGGTTTTGGATATACAGGGCACTTCATTGGGAGCCTTCCCGAGTGTAACAACAGATCTTCTCCTCTTGAGGTACTTGAGTTTGAGGAATACAGATATAAGAAGCATCCCCGAAACCGTGAGTAACCTAAAGCAGCTTGAGACCTTGGATCTCAAGCAAACTCGGGTGAAAAAGCTACCCAAATCAGTCCTACAACTTGGGGAACTTCGCCATTTGCTGGTTTGTCGCTACAATAATGGACGTTGCATTGAAGAACCTACAAAAGCTATCATTTGTAAAGGCGAGATGGCAGTACAGAATGATAGAGGAGCTCCAACATTTGACACAGTTGAGGAAGCTGGGCATTGTAGCACTAGAAAAAGAAGATGGAAAGAGCTTGTGCGACTCAATTGA 4392 43.99 MFLHQSYPISINEWIFILIVLLQQFVDLREKREIMVGLETEIAGALVEGSVTFLLQKIDAIATREWNLKQINRMKVQDIGRELGSIEALLQADSKEDPDHQYAVWIQQVRDQANAIEDVLDRVRLAEGSVWWGLKMRYSTEELIQEINTSLQNIQRTRERYHSMRSTSTHTGYSTYFPVRAAPLFTGDVDTVGIEEPRNQLVSWALEPRQRLEVMFVVGMAGLGKTTLVNSVYERVKQHFDCHVWITASKSKNKLDVLCTLLVEGFGCSITQRADKVAQARNLRKFLHNKRYVIVVDDLWEKNVWESIKLVLPDDGNNSRIIITTRRGDIANSCRDDDSIHIHKLQPLSWENAKQLFHTKAFSKNGGCPSGLEEISKSILHKCDGLPLGIIEIGKLLSRKAQTAYEWDKLHNSLESELRSSGGLSNMMSALSASYEDLPYHLKYCFLYLSMFPENKPVKRRRLIRLWIAEGFVREERGKTLEEVGEEYLNELIDRNMLKANEMDFDGRPKSMGVHSLMHKMILLVSHEDNFCSVCTGAEGNLTEKTRRLSIQKEGFDVPQDEPLPCVRTFFSFSTGMVNIGSNFELLMVLDMEGTPLVNFPSAITDLVLLRYLSLRNTNIRSIPWSLSKLRHLETLDLKQTLVTKVPKTVLKLKKLRHLLVYRTKEDRRIEEPTKAFICKGKKLGILDAMDPPRLLQRLYLKGPLQRFPRWVSSLHDLVRIRLKWSSLTEDNPIAALEDLPNLMELQLLDAYTGDQFDFNKGKFQKLKILDLERLERLKFIIMEDGTLPCLQKLIIRHCKELKQVPIGIDNLNHLNELFLCDMPEKFVAQLRKKVGELRHLLHRISYILWIQDVREEAYDIEDVIDLLSLDMTQESARRRWKMRHSINDLIEKINRSLENSQKIQERYQKLVSTPTNAVNNTYPHEKLASLFLGNVDTVGMEEPRNKLVSWVLEPKQRLKMMFVVGMAGLGKTTLVHSVYERVKQRFDSHVWITASESKTKLEILLSLLAKKFGCSITPGADMVAVTHELQKFLRNKRYVMVIDDFCVKDVWESIRLALPDGNNSRIIITTRRGDIANSCRDDDSIHIHKLQPLSWENAKRLFHTKAFSRNSRCPSGLEELSQSILQKCDGLPLGIIEIGRLLKSKAQTAYEWQKLHDNLESELRSGGGLSNMMKVLSTSYKDLPYHLKCCFLYMGIFPENKPVKRRRLVRLWIAERFVTEERGKTLEEVGEEYLNELIDRSLIQANEMDFDGRPKSVGVHCLMHKMILSLSHEENFCTLHCTGAKKNFTEKTRRLSIQKKDFDISQELPRLRTFFSFSTGRVNIRWINFLRLRVLDIQGTSLGAFPSVTTDLLLLRYLSLRNTDIRSIPETVSNLKQLETLDLKQTRVKKLPKSVLQLGELRHLLVCRYNNGRCIEEPTKAIICKGEMAVQNDRGAPTFDTVEEAGHCSTRKRRWKELVRLN* 1464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 850560 867482 + Vvi1g85 Vvi1g85 769285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g85 1463 Gene3D - 1094 1180 IPR042197 -
Vvi1g85 1463 Gene3D - 348 439 IPR042197 -
Vvi1g85 1463 Coils Coil 106 126 - -
Vvi1g85 1463 Pfam NB-ARC domain 209 437 IPR002182 GO:0043531
Vvi1g85 1463 Pfam NB-ARC domain 944 1182 IPR002182 GO:0043531
Vvi1g85 1463 Gene3D - 441 523 IPR036388 -
Vvi1g85 1463 Gene3D - 929 1089 IPR027417 -
Vvi1g85 1463 Gene3D - 183 343 IPR027417 -
Vvi1g85 1463 PANTHER DISEASE RESISTANCE PROTEIN RP 850 1416 IPR044974 GO:0006952
Vvi1g85 1463 PANTHER DISEASE RESISTANCE PROTEIN RP 689 830 IPR044974 GO:0006952
Vvi1g85 1463 PANTHER DISEASE RESISTANCE PROTEIN RP 70 667 IPR044974 GO:0006952
Vvi1g85 1463 SUPERFAMILY L domain-like 1249 1410 - -
Vvi1g85 1463 Coils Coil 887 907 - -
Vvi1g85 1463 CDD RX-CC_like 48 154 IPR038005 -
Vvi1g85 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 449 IPR027417 -
Vvi1g85 1463 PRINTS Disease resistance protein signature 214 229 - -
Vvi1g85 1463 PRINTS Disease resistance protein signature 286 300 - -
Vvi1g85 1463 PRINTS Disease resistance protein signature 383 397 - -
Vvi1g85 1463 PRINTS Disease resistance protein signature 762 778 - -
Vvi1g85 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 933 1194 IPR027417 -
Vvi1g85 1463 Gene3D Ribonuclease Inhibitor 1285 1431 IPR032675 -
Vvi1g85 1463 Gene3D Ribonuclease Inhibitor 579 837 IPR032675 -
Vvi1g85 1463 SUPERFAMILY L domain-like 561 829 - -
Vvi1g85 1463 Coils Coil 140 160 - -
Vvi1g85 1463 PANTHER - 70 667 - -
Vvi1g85 1463 PANTHER - 850 1416 - -
Vvi1g85 1463 PANTHER - 689 830 - -
Vvi1g85 1463 SMART LRR_typ_2 1376 1399 IPR003591 -
Vvi1g85 1463 SMART LRR_typ_2 630 653 IPR003591 -
Vvi1g85 1463 SMART LRR_typ_2 1353 1375 IPR003591 -
Vvi1g85 1463 SMART LRR_typ_2 607 629 IPR003591 -
Vvi1g85 1463 Gene3D - 50 165 - -
Vvi1g85 1463 Pfam Rx N-terminal domain 51 125 IPR041118 -
Vvi1g85 1463 Gene3D - 1181 1270 IPR036388 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g85 K13457 - vvi:100264573 1189.48