Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g250 ATGGGAAAGAAGGGAGGGTCCTCCTGGTTGACAGTGGTGAAAAGGGCCTTCAGGTCTCCAATCAAGGACAATGAGAAAAAGAGTAGCAGAAGGAGAGAAGAGCATGAGCTAGAAGAAGAAGAAGAGGAAAAGAGAGAGAAGCGAAGATGGATCTTCCGGAAACCTACTACTACTACCACTACTACTAATCATGTTCAAGTTCAAGAATGTGAAACAAAGATGATATCAAGTGTACCCACAAATCCCATTTTGGTTGCTGAGCAGAGGCATGCAATTGCAGTGGCAGCAGCCACAGCAGCGGCAGCTGAAGCTGCTGTGGCAACAGCCCAAGCAGCTGTGGAGATTGTCCGTCTCACTAGGCCATCCAGCTTCTTCAGAGAACACTACGCTGCTGTAGTCATTCAGACAGCTTTCAGAGGCTACTTGGCAAGGACAGCGCTTCGTGCACTTAAGGGTCTTGTAAAACTTCAAGCTTTGGTAAGAGGACACAATGTTCGAAAGCAGGCGAAGATGACACTGAAATGTATGCAAGCTCTGGTCCGAGTGCAGTCTCGGGTGCGTGATCAGCGTGCGAGGCTTTCGCATGAAGGGAGCAGGAGGTCAATGTTTGCTGAAACCAACAGCCTATGGGAGTCTCGATATCTTCAGGAAATTAGACACAGAAAGTCCATGTCGAGGGATAGAAGCAGCATAGCAGATGAGTGTTGCGGCCGCCCCCATGAGATTGAGGAGATTGAAGCCATGTTCAGAAGTAGGAAGGAAGGTGCATTAAAACGTGAAAAAGCCCTGGCTTACGCTTTCTCTCATCAGGTATGGAGATCAGGAAGGAACCCATTTGCAGGAGATGAAGAAGATCTAGAGGAAAGAACAAAATGGCTTCAAAGGTGGATGGCAACAAAGCGATGGGAAAGCAGCAGCAGAGCTTCTACTGATAAAAGAGATGCTATAAAGACGGTTGAAATTGACACTTCTAGGCCTTATTCTTACTCTGCTAGTAATGTTCGAAGGTCCTCAGTTTATCAAAATCAACACCTCAGACCACCCACCCCACATTCCACTGCCTCTCCCTTCCACAAAGCGCACCACAACCTCTCTCTCCACCTCTCACCTGTCACTCCCTCTCCTTCCAAAACAAGACCCCTGCAAGTCCCAAGCACAAATGGGGATGTTGCTAGTGCTGTATTGCCCAACTACATGGCTGCCACTGAGTCTGCCAAGGCTCGGGTTCGTTCAGAAAGTGCACCAAGACAGAAGCCCTCAACGCCAGAGAGAGAGCGAGGAGGTGGTATGCTCAGCAAGAGCCTGAGAAGCCCCAGCTTCAAAAGTGTTCATGCCAACCTCTCTTCCTGCTACACTGACAGCCTTGGTGGAGAGATTTCTCCAACTACAACCAGTACCGAGCAAAGAGGGTGGCTAAGATGA 1422 48.95 MGKKGGSSWLTVVKRAFRSPIKDNEKKSSRRREEHELEEEEEEKREKRRWIFRKPTTTTTTTNHVQVQECETKMISSVPTNPILVAEQRHAIAVAAATAAAAEAAVATAQAAVEIVRLTRPSSFFREHYAAVVIQTAFRGYLARTALRALKGLVKLQALVRGHNVRKQAKMTLKCMQALVRVQSRVRDQRARLSHEGSRRSMFAETNSLWESRYLQEIRHRKSMSRDRSSIADECCGRPHEIEEIEAMFRSRKEGALKREKALAYAFSHQVWRSGRNPFAGDEEDLEERTKWLQRWMATKRWESSSRASTDKRDAIKTVEIDTSRPYSYSASNVRRSSVYQNQHLRPPTPHSTASPFHKAHHNLSLHLSPVTPSPSKTRPLQVPSTNGDVASAVLPNYMAATESAKARVRSESAPRQKPSTPERERGGGMLSKSLRSPSFKSVHANLSSCYTDSLGGEISPTTTSTEQRGWLR* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2335461 2337426 - Vvi2g250 Vvi2g250 782949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g250 473 SMART iq_5 126 148 IPR000048 GO:0005515
Vvi2g250 473 SMART iq_5 149 170 IPR000048 GO:0005515
Vvi2g250 473 MobiDBLite consensus disorder prediction 367 389 - -
Vvi2g250 473 Pfam IQ calmodulin-binding motif 130 148 IPR000048 GO:0005515
Vvi2g250 473 Pfam IQ calmodulin-binding motif 154 170 IPR000048 GO:0005515
Vvi2g250 473 PANTHER PROTEIN IQ-DOMAIN 14-LIKE ISOFORM X1 1 425 - -
Vvi2g250 473 Coils Coil 23 50 - -
Vvi2g250 473 Gene3D - 126 175 - -
Vvi2g250 473 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Vvi2g250 473 ProSiteProfiles IQ motif profile. 151 178 IPR000048 GO:0005515
Vvi2g250 473 MobiDBLite consensus disorder prediction 409 423 - -
Vvi2g250 473 MobiDBLite consensus disorder prediction 20 47 - -
Vvi2g250 473 MobiDBLite consensus disorder prediction 366 389 - -
Vvi2g250 473 PANTHER IQ-DOMAIN 5-RELATED 1 425 - -
Vvi2g250 473 MobiDBLite consensus disorder prediction 403 473 - -
Vvi2g250 473 MobiDBLite consensus disorder prediction 435 473 - -
Vvi2g250 473 Pfam Protein of unknown function (DUF4005) 363 443 IPR025064 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g250 Vvi15g624 ECH
Vvi2g250 Vvi16g977 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g250 - - vvi:100263362 834.328