Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g434 ATGGAAAATATGGACGGGTTCATCTCAGCAAGTCCAGAAAAGATGTTGCCTCTACTAACAACGCATTCACCCGATTTCCTAGGGTTGCACCAGGAAATGGGATTCTGGAAAGAATCAAATTTCGGAAAGGGGGTGATCATTGGAGTATTGGACTCTGGAGTGTTGCCTAGCCATCCTTCATTTAGCGGTGAAGGAATTCCACCTCCACCAGCTAAATGGAAAGGAAGCTGTGAGTTCATGGCATCAGAATGTAACAACAAACTAATTGGTGCAAGGTCTTTCAATTTGGGATGGCACCTTACGCTCACTTGGCAATATACAAGGTGTGATCCTGCAGTTCCATTTTTCCAGGACAATATAGCGGTGGGCTCATTTGCAGCAATGCAAAAGGGAATTTTTGTGAGCTGTTCAGCTGGGAATTCTGGCCCTTTCAACACCACTCTATCTAACGAAGCCCCATGGATTCTCACTGTTGGAGCCAGTTCCATTGATAGAACCATCAAAGCTGCTGCAAAACTTGGAAATGGGGAACAATTTGATGGTGAAACCCTTTTCCAGCCCAGTGACTTCCCAGCCACACAATTGCCTCTCGTTTATGCTGGAATGAATGGTAAACCAGAGTCTGCAGTATCCTATATAAACTCAACCGCAACACCAACAGCAGCAATCTTGTTTAAAGGAACCGTAATTGGCAACCCATTGTCTCCCGCTATTACTTCCTTCTCTTCCAGAGGCCCCAGCTTTGCAAGTCCAGGAATTCTGAAACCGGATATTATTGGGCCTGGGGTGAGCATCCTAGCTGCATGGCCCTTCCCTCTTGACAATAACATAAATTCAAAATCCACATTCAACATAATCTCTGGCACATCAATACTTCTTCCTGCAGACATATTTGCTACTGGCGCAGGTCATGTTAACCCATCAAGAGCCAATGATCCAGGCTTGGTTTATGATATCGAACCTGATGACTATATACCTTATTTATGTGGCCTGGGCTACACAGATACTGAAGTTGGGATCCTTGCACATCGATCCATCAAATGCTCAGAAGAATCCAGCATTCCTGAAGGAGAGCTAAACTACCCTTCATTTTCTGTTGCACTGGGACCACCTCAGACTTTCACGCGGACTGTGACAAATGTTGGTGAGGCCTATTCATCTTACACCGTAACGGCGATTGTACCACAAGGAGTTGATGTGAGTGTCAATCCTGATAAGCTTTACTTCTCAAAGGTGAACCAGAAGCTGACGTATTCAGTGACATTCAGCCACAATAGCTCCAGCGGGAAAAGCAGCAAATTTGCTCAAGGATATCTCAAATGGGTTTCTGGAAAACACTCTGTTGGGAGTCCAATCTCCATTATGTTCAAGTGA 1374 44.98 MENMDGFISASPEKMLPLLTTHSPDFLGLHQEMGFWKESNFGKGVIIGVLDSGVLPSHPSFSGEGIPPPPAKWKGSCEFMASECNNKLIGARSFNLGWHLTLTWQYTRCDPAVPFFQDNIAVGSFAAMQKGIFVSCSAGNSGPFNTTLSNEAPWILTVGASSIDRTIKAAAKLGNGEQFDGETLFQPSDFPATQLPLVYAGMNGKPESAVSYINSTATPTAAILFKGTVIGNPLSPAITSFSSRGPSFASPGILKPDIIGPGVSILAAWPFPLDNNINSKSTFNIISGTSILLPADIFATGAGHVNPSRANDPGLVYDIEPDDYIPYLCGLGYTDTEVGILAHRSIKCSEESSIPEGELNYPSFSVALGPPQTFTRTVTNVGEAYSSYTVTAIVPQGVDVSVNPDKLYFSKVNQKLTYSVTFSHNSSSGKSSKFAQGYLKWVSGKHSVGSPISIMFK* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4329209 4331242 - Vvi2g434 Vvi2g434 783133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g434 457 Pfam Subtilase family 124 290 IPR000209 GO:0006508|GO:0008236
Vvi2g434 457 PRINTS Subtilisin serine protease family (S8) signature 42 61 IPR015500 -
Vvi2g434 457 PRINTS Subtilisin serine protease family (S8) signature 226 242 IPR015500 -
Vvi2g434 457 Gene3D - 164 201 - -
Vvi2g434 457 Gene3D - 208 231 - -
Vvi2g434 457 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 112 210 - -
Vvi2g434 457 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 1 100 - -
Vvi2g434 457 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 211 294 - -
Vvi2g434 457 PANTHER SERINE PROTEINASE 1, PUTATIVE-RELATED 293 456 - -
Vvi2g434 457 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 112 210 IPR045051 -
Vvi2g434 457 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 293 456 IPR045051 -
Vvi2g434 457 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 211 294 IPR045051 -
Vvi2g434 457 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 100 IPR045051 -
Vvi2g434 457 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 47 58 IPR023827 -
Vvi2g434 457 Gene3D Peptidase S8/S53 domain 232 291 IPR036852 GO:0004252|GO:0006508
Vvi2g434 457 Gene3D Peptidase S8/S53 domain 20 109 IPR036852 GO:0004252|GO:0006508
Vvi2g434 457 Gene3D Peptidase S8/S53 domain 114 163 IPR036852 GO:0004252|GO:0006508
Vvi2g434 457 Gene3D Peptidase S8/S53 domain 294 324 IPR036852 GO:0004252|GO:0006508
Vvi2g434 457 Pfam Fibronectin type-III domain 358 454 IPR041469 -
Vvi2g434 457 SUPERFAMILY Subtilisin-like 18 315 IPR036852 GO:0004252|GO:0006508
Vvi2g434 457 Gene3D - 328 456 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g434 Vvi15g496 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g434 - - vvi:109121849 468.388