Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g45 ATGGGGGACTGGGATTTGCAGTCTGTGGTTAGGGGATGCGCCATTAATGAAGCTTCCTCGGCCGCTTTCATGGACACTTCGTTGCCTTGCTTCGGCCCCTTGGCGATTCAACAAGACGAACTTCTCTTCAGCTTCCCCGACTTCTTTGAAACTACCACTGTTTTGGACGAATTGGAGCAGTTGTACAAGCCTTTCTACCCTGTTCTGCAACCGCTTTCTCCCGTACGAACAGCTGCCGCGCCCTCCATTTCCATGGAAGACCCAAAGAAGATGAAAGGGCAGGACCATCTTCCTGGCACTGCTGACAATGGTGGCGGTGGCCCTGGTTCTCACGGGGCTAAACCCAAGAAAAGGAAGAACCAGCAAAAACGAGTGGTGCAACATGTAACAGCCGAGGGTCTGTCTTCGGATGTGTGGGCTTGGCGTAAATATGGGCAGAAACCCATTAAGGGTTCGCCTTATCCAAGGAGTTATTACAGGTGCAGTAGTTTAAAGGGGTGTTTGGCGAGAAAACAAGTGGAGAGGAGCCGAACAGATCCGGAGATTTTCATTGTGACCTACACAGCTGAACACAGCCATTCTCATCCAACTCGCCGGAATTCCCTCGCCGGAATCACCAGAAACAAGTTCTCCACACCTAAAAAACCCAGCAAAGCCGAGCCGCCCAGCACACCAACAACAGTGGCCAATGATTCGTCCTCTTCTCCAATTTCAACCTCCGATTTCTCTGCAACAACCCCTTTAATGTCCGCCATGGAAGATGAGTTGCAGCCATATGTAAGCCAACAAGAGATCCGAGGAGAAGAAGATCAGAAGCTAAACGAGAGGAATAACACCAACGAGGTTCACATCTCTGATGAGATACTGAACAACGATTTCTTCCTGGGCCTGGAGGACATGGACTTTTCTGTACAGTTCCCGTCTTCTTTTCTTCAACCTTGGTTCGCCGCAACTGCCGCCGGCGGTTGCTGA 972 50.72 MGDWDLQSVVRGCAINEASSAAFMDTSLPCFGPLAIQQDELLFSFPDFFETTTVLDELEQLYKPFYPVLQPLSPVRTAAAPSISMEDPKKMKGQDHLPGTADNGGGGPGSHGAKPKKRKNQQKRVVQHVTAEGLSSDVWAWRKYGQKPIKGSPYPRSYYRCSSLKGCLARKQVERSRTDPEIFIVTYTAEHSHSHPTRRNSLAGITRNKFSTPKKPSKAEPPSTPTTVANDSSSSPISTSDFSATTPLMSAMEDELQPYVSQQEIRGEEDQKLNERNNTNEVHISDEILNNDFFLGLEDMDFSVQFPSSFLQPWFAATAAGGC* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 512162 513533 + Vvi2g45 Vvi2g45 782744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g45 323 SMART WRKY_cls 135 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g45 323 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 301 IPR044810 GO:0003700
Vvi2g45 323 MobiDBLite consensus disorder prediction 221 243 - -
Vvi2g45 323 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 3 301 - -
Vvi2g45 323 MobiDBLite consensus disorder prediction 198 212 - -
Vvi2g45 323 Gene3D WRKY domain 118 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g45 323 MobiDBLite consensus disorder prediction 79 125 - -
Vvi2g45 323 ProSiteProfiles WRKY domain profile. 130 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g45 323 Pfam WRKY DNA -binding domain 137 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi2g45 323 SUPERFAMILY WRKY DNA-binding domain 130 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi2g45 323 MobiDBLite consensus disorder prediction 190 243 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g45 Vvi16g787 ECH
Vvi2g45 Vvi15g833 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14594 PF03106 WRKY 4.10E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g45 K13426 K13425 vvi:100251862 620.928