Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g96 ATGGGAAAAAGTGAAGCTGAGATGTCTTCTAAATCTGATAAAATATCCTCCTCTGCAGAGGAACAGACCAACATCCATCTTCTCAACCCTGACTGGGCATCTATACAGGCATACTATGGATCTGGAGTCCCTCTTCTGGCACCACATTTCAACTCTGCAGTCCCGGGCAGTCATTTTCCTTATCCATATGTATGGGCTCCATCTCAGCCACTGATTCCACCTTATGGGGTGCCCTACACGGCAATCTACTCACATGAAGGTGTTCATGCACATCCTGCAGTTCCTCTTGTTGCAACTCCATTAAGCAAAAAAGCTCCTTCTAGATCATCAGTGGACATGGATCAAGGCGTTAGAAAGAAGTTTAAAAGATTGGATGGGCTGGCAGTACCTGTAGGCAATGTTAGCACTGAGGACGATGCCGGAGGCTCAGTCTATGAGGTGTCACAGAGTGTGAAACATGGTATTGATGGTTCTACTGATGGAAGTGATGGAAACACTGGAGCATTCCTACCCCAGAGGAATAGCGGTTCTGAGGGCATCCTTTCTACTGACAATGATGGGAACTTCCATAGGTTTGCTGGTTCCTTATCTGAAGGAGAAGCATATGCAGCTTCCCACAAGGTTTCTGTGAACTCTGTGGCCCCTACAAATGTTGCAGGAAAATCTGTCAGACCCCTTAATAGAAATGAAGAAATTCATGCAGCTTGTGTTGCTTCTAGCACTAGTGCAGGGTCACCTTTTGAAGTCTGTCAACAGGATGAACGGCAGCTGAAGCGAGAGAGGAGGAAACAGGCTAATAGAGAATCTGCTAAGAAGTCCAGGTTGAGGAAGCAGGCTGAAAATGAGGAACTGAGAATGAGATACGAAACCCTGAATGAGGAGAATAAGGCACTGAAGTTTGAAATAAGCAAGCTAACAGAGCATTTGGACAAAGTGAGGCTAGAAAATACTGCATTACGGGAGAAGCTGAAAAATAAACAGCAGCTTGAACTGCAAGGAGAGATGGCTCCATATAAGATTGAGGCTGATTTGATCCTTCCTGACAGTCCTGAGGAGGTATATAAGCTGAATGACTCCAACTCTCTTAACCAAAATGTGCAGATGGAATGTGGGATCCAAGAGAACCCAAATTCTGAAACCAAGCTCCATCAGTTATTGAAATCAAACTCTAGGACAGATGCAATTGTGGCAGGCTGA 1197 45.11 MGKSEAEMSSKSDKISSSAEEQTNIHLLNPDWASIQAYYGSGVPLLAPHFNSAVPGSHFPYPYVWAPSQPLIPPYGVPYTAIYSHEGVHAHPAVPLVATPLSKKAPSRSSVDMDQGVRKKFKRLDGLAVPVGNVSTEDDAGGSVYEVSQSVKHGIDGSTDGSDGNTGAFLPQRNSGSEGILSTDNDGNFHRFAGSLSEGEAYAASHKVSVNSVAPTNVAGKSVRPLNRNEEIHAACVASSTSAGSPFEVCQQDERQLKRERRKQANRESAKKSRLRKQAENEELRMRYETLNEENKALKFEISKLTEHLDKVRLENTALREKLKNKQQLELQGEMAPYKIEADLILPDSPEEVYKLNDSNSLNQNVQMECGIQENPNSETKLHQLLKSNSRTDAIVAG* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 990819 996189 + Vvi2g96 Vvi2g96 782795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g96 398 Coils Coil 262 329 - -
Vvi2g96 398 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 261 276 IPR004827 GO:0003700|GO:0006355
Vvi2g96 398 SUPERFAMILY Leucine zipper domain 257 311 IPR046347 GO:0003700|GO:0006355
Vvi2g96 398 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Vvi2g96 398 MobiDBLite consensus disorder prediction 156 183 - -
Vvi2g96 398 PANTHER G-BOX-BINDING FACTOR 3 1 398 - -
Vvi2g96 398 MobiDBLite consensus disorder prediction 1 21 - -
Vvi2g96 398 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 398 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi2g96 398 Gene3D - 257 311 - -
Vvi2g96 398 MobiDBLite consensus disorder prediction 259 279 - -
Vvi2g96 398 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 256 319 IPR004827 GO:0003700|GO:0006355
Vvi2g96 398 CDD bZIP_plant_GBF1 259 310 IPR045314 GO:0003700|GO:0006355
Vvi2g96 398 Pfam bZIP transcription factor 254 316 IPR004827 GO:0003700|GO:0006355
Vvi2g96 398 SMART brlzneu 254 318 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g96 Vvi15g772 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14626 PF07777 MFMR 1.10E-30 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g96 K09060 - vvi:100257104 772.311