Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g373 ATGAATGATCTTATGACAAAATCGTTCCTCAGTTATGTTGAATTGAAGAAACAGGCCATGAAAGATCTCGAATCTGAGCCAGACATCGAGATGGGAAAACTCGACCCAACAGATGAACAAAACCTTACTAACTTCTTCGAAGAAGTGGGTGCAATCAAGACAGATATGGAAGAGATCGTCAATCTCCTTCTAGACCTACAAGATCTAAATGAAGAGTCAAAATCTACGCACAGTGCTAAAGTTCTTCGAGGGCTCAGAGACCGAATAAACTCAGACATGGTAACTATTCTTCGAAAGGCGAAAAATATCAAAGCAAGATTGGGATCCCTTGATCAATCCAATATCGATAATCGCATACTCTTGGTTCTCTTCTTTTTCTTTGATTTATCAATGAGTGTTTTTGGATTTCTCAATCTGTTTCCATCTGTTTCCTTTTCTTCTCTTATAGAGTTTGTGATAGTGTTTGCTCTGTTGGCACAATTTTCCTACCTATAA 495 37.98 MNDLMTKSFLSYVELKKQAMKDLESEPDIEMGKLDPTDEQNLTNFFEEVGAIKTDMEEIVNLLLDLQDLNEESKSTHSAKVLRGLRDRINSDMVTILRKAKNIKARLGSLDQSNIDNRILLVLFFFFDLSMSVFGFLNLFPSVSFSSLIEFVIVFALLAQFSYL* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3461862 3463814 + Vvi3g373 Vvi3g373 784048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g373 164 Coils Coil 52 72 - -
Vvi3g373 164 PANTHER SYNTAXIN-112 4 121 - -
Vvi3g373 164 PANTHER SYNTAXIN 4 121 IPR045242 -
Vvi3g373 164 Pfam Syntaxin 44 118 IPR006011 GO:0016020
Vvi3g373 164 Gene3D - 37 121 - -
Vvi3g373 164 SUPERFAMILY t-snare proteins 41 122 IPR010989 GO:0016020|GO:0016192
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g373 Vvi4g990 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g373 K08486 - vvi:100262324 219.164